Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq73737 107 2e-18 seq67887 82.4 6e-11 >seq73737 Length=23676 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||||||||| || | | ||| | || ||||||||||| || Sbjct 14632 GTCGACTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCT 14691 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | ||| |||||||| || || | ||| ||||| || ||| ||| ||| Sbjct 14692 GCAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTA 14751 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| |||||||| |||||||||| ||||| ||||| || Sbjct 14752 ACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGTC 14811 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 14812 TTCACAAAGATCTGCAT 14828 >seq67887 Length=198949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || | ||||| || || || || ||||| || Sbjct 190727 CCACCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCG 190786 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| || || || ||||| | || || | || || || || || Sbjct 190787 AGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 190846 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| ||| || || | | | || | |||||| | | ||||||| Sbjct 190847 ATTCCCTCTTTATCCTGGATTTTCGCCTTAACGTTATCAATAGTGTCGGAGCTTTCAACT 190906 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||| || || || ||||| || |||||||||||| Sbjct 190907 TCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCATA 190954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424108118777376