Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq70622 134 2e-26 seq25445 107 2e-18 seq113574 102 1e-16 seq43445 93.3 5e-14 >seq70622 Length=39777 Score = 134 bits (148), Expect = 2e-26 Identities = 251/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | || || ||||| | || | |||||| || || | ||||||||| || Sbjct 2939 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 2880 Query 11512 AATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 ||| || | | ||||| | || || ||| |||||||| || ||||| | |||||| Sbjct 2879 AATGACAATGACTCCAGTGT--TTCCAGTGAAA-CCATCCATTTCAGTGAGAAGTTGATT 2823 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 || ||| || ||||| ||||||||| | | ||||| | | |||| | || || Sbjct 2822 AAGTGTCTGCTCTCTTTCATCATTTCCACCGCCAATACCAGTTCCTCTTTGCCTCCCAAC 2763 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||||||||||||||| ||||| | ||| ||| |||||| || | | || | Sbjct 2762 AGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTCCTTTGCCTTGTTGAATAA 2703 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 || | ||| || || |||||||||||||||||||| ||||| | || ||||| Sbjct 2702 GTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACAAACTCTGAACCAGAGAG 2643 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | |||||| || | || ||| || ||||| || || || | ||||| || || Sbjct 2642 AGATAAGAATGGAACCTCTGCTTCTCCGGCGATCGCCTTAGCTAGCAATGTCTTCCCTGT 2583 Query 11809 ACCTGG 11814 ||||| Sbjct 2582 CCCTGG 2577 >seq25445 Length=22738 Score = 107 bits (118), Expect = 2e-18 Identities = 280/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 3580 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 3521 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 || ||||| || || | || ||| || | || ||||| || |||||||| || | | Sbjct 3520 CCGTCCATTTCTGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--CCTC 3463 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 3462 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 3403 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || ||||| || || | ||| || |||||||||| Sbjct 3402 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCTACACCAACAA 3343 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| ||||| | || | || | || || ||||| ||| | |||||| || Sbjct 3342 ACATCTCAACAAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 3284 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || |||||||| || ||||| || ||| | ||||| | ||| Sbjct 3283 ATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 3224 Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || | | | ||||| | || | |||||||| | ||| | ||| || || | ||| Sbjct 3223 GGAATACGAGCCCCCACTGCGGTAA-ACCTCTCGGGCTTCTTCAAAAATTCTACGACCTC 3165 >seq113574 Length=79877 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || |||||||| || |||||||| || | ||||| | ||| ||| ||||| | ||| Sbjct 17467 TGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 17526 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||||||| | |||||| ||||| || ||| |||||| || | | Sbjct 17527 GACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGAT 17586 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 || | ||| | ||||| ||||| |||| | | | || | || | || | || || Sbjct 17587 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 17645 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | ||||||||||||||| |||||||||| || ||||| |||| Sbjct 17646 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 17690 >seq43445 Length=222620 Score = 93.3 bits (102), Expect = 5e-14 Identities = 269/408 (66%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||||| || || || |||||||||||| | Sbjct 212305 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 212361 Query 11599 CATACCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 ||| || ||| ||| | |||| | || || ||||||||||||||||| || || Sbjct 212362 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 212418 Query 11653 AATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 |||||| || | ||| | || | ||||| | ||| | || || || |||| Sbjct 212419 AATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 212477 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 |||| ||||||| ||| ||||| | || || | || || ||||| ||| || | Sbjct 212478 CACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 212537 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 |||| || | |||| || | || ||||| || || || || ||| | | ||| Sbjct 212538 CACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTGCCAGGTGGTCCCACTAAAAGAC 212597 Query 11832 CGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA 11891 ||| || ||||| ||||| || |||| | || || | || | ||||| | Sbjct 212598 ACCCTTTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCAA 212657 Query 11892 CAATCTCTT-CAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 ||| |||| ||| | || | |||||| ||| || |||||||| Sbjct 212658 CAACTTCTTGCAACTCCAAC-TTGGCCTGATCAGCACCAGCAACATCA 212704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626779484380800