Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq25445 136 5e-27 seq74458 123 3e-23 seq43445 113 5e-20 seq70622 98.7 1e-15 seq113574 86.0 7e-12 >seq25445 Length=22738 Score = 136 bits (150), Expect = 5e-27 Identities = 275/399 (69%), Gaps = 12/399 (3%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 3611 ATCAAATCGCCCTGGTCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 3552 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||| ||||| |||||||| |||||||| Sbjct 3551 AACAACTATTATACCAGTATTTCCTT--CGAAACCGTCCATTTCTGTCAATAGTTGGTTC 3494 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 3493 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 3436 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAG 9760 | |||||||| ||||||| || || ||||| || |||||| || ||| ||| Sbjct 3435 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 3377 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 3376 AGATCACGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 3317 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 3316 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCC 3258 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 ||||| || ||| | || || ||||| |||||| Sbjct 3257 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAAT 3219 >seq74458 Length=76282 Score = 123 bits (136), Expect = 3e-23 Identities = 200/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 19153 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 19096 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || |||| | ||| | ||||| ||||||||||||||||| || || ||| Sbjct 19095 CCTCCCATTCCTGCACCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 19036 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| || |||| || | ||||| ||| || | || || || Sbjct 19035 CAAGGCGC--TTTCGACTTCGCCTTCTCGAACAAATCCCT--CACTCTAGAAGCTCCAAC 18980 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 18979 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 18920 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 18919 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 18878 >seq43445 Length=222620 Score = 113 bits (124), Expect = 5e-20 Identities = 253/377 (67%), Gaps = 16/377 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| |||||||| ||||| |||||||| || |||| |||||||| | Sbjct 212305 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 212361 Query 9673 CATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 212362 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 212418 Query 9727 GATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 || || || ||||| || || ||||| | ||||| ||| | || ||| Sbjct 212419 AATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCC 212476 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 ||||| ||||||| ||| ||||| | || || | |||| || || || ||| | Sbjct 212477 ACACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCC 212536 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| || | |||| || | ||| |||||||| || || || ||| | | || Sbjct 212537 TCACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTGCCAGGTGGTCCCACTAAAAGA 212596 Query 9905 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||| ||||| || || || ||| | ||||| | || | ||||| Sbjct 212597 CACCCTTTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCA 212656 Query 9965 ACAATTTCTTCCAATTC 9981 |||| ||||| ||| || Sbjct 212657 ACAACTTCTTGCAACTC 212673 >seq70622 Length=39777 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 2939 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 2880 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 ||||||| | || |||||| | ||||||||||| || || | |||||| ||| Sbjct 2879 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCAGTGAGAAGTTGATTA 2822 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 | || || || | ||||||||| | | | || ||||| | | |||| | || | Sbjct 2821 AGTGTCTGCTCTCTTTCATCATTTCCACCGCCAAT--ACCAGTTCCTCTTTGCCTCCCAA 2764 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 | ||||||||||||||||| ||||| | || ||| |||||| || | || | Sbjct 2763 CAGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTCCTTTGCCTTGTTGAATA 2704 Query 9762 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 9807 |||| || || || | || |||||||||||||||||||| ||||| Sbjct 2703 AGTCCC-TA-ACTCTAGAAGCTCCCACACCAACAAACATCTCAACAAA 2658 >seq113574 Length=79877 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 ||||||| || | || ||| |||||| ||||||||||||||| | || || | || | Sbjct 17693 AGAGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAG 17634 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 || | ||| | | |||| ||||| ||||| | ||| | || | | || || Sbjct 17633 ATTC-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGAT 17575 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 || ||| || ||||| |||||| | ||||||| | |||||| ||| | ||| Sbjct 17574 CCACAAGGATGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGATGGTT 17515 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| ||| | ||||| | || |||||||| || |||||||| ||| Sbjct 17514 CACTCATGCATCTCCAACATTATTTAATGCTGGAACTCCAAGACCTCAA 17466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582097573823520