Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq67887 105 5e-18 seq72910 91.5 1e-13 seq102184 87.8 1e-12 seq11802 84.2 2e-11 >seq67887 Length=198949 Score = 105 bits (116), Expect = 5e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||||||| ||||| |||| || |||||| | Sbjct 191181 ATGCAAATCTTTGTCAAAACCCTAACTGGGAAAACAATTACCCTTGAAGTGGAAAGCTCT 191122 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| || | | | || | | || ||||| ||||| | || || Sbjct 191121 GACACAATTGACAA-CGTTAAGGCGAAGATTCAG--GACAAGGAAGGAATCCCACCAGAT 191065 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || ||||||||||| || ||||| |||| || | | |||||||| Sbjct 191064 CAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGAACTCTCGCCGATTAC 191005 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| |||| | || ||||| | ||| | || ||||| Sbjct 191004 AACATTCAAAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTTCGCGGCGG 190955 >seq72910 Length=47125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || || || |||| |||||| | Sbjct 43300 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAATCC 43241 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| || || ||| || ||||| ||||| |||| Sbjct 43240 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCAC 43186 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| ||| | ||||| ||||||||||| |||| || | || | | | | | Sbjct 43185 CGGACCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTGGAGGATGGCCGAACCCTAGCTG 43126 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || || |||| | |||||||| | ||| | ||||| || Sbjct 43125 ATTACAACATCCAGAAGGAATCCACTCTCCATTTGGTGCTCCGTCTCCGTGGTGG 43071 >seq102184 Length=23720 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| || |||||| |||| ||||| ||| | Sbjct 2370 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 2311 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||| || ||| |||| || | Sbjct 2310 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATC 2253 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | ||| |||| |||||||| || || ||| | || || | | | |||| | |||||| Sbjct 2252 AACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTG-CTGATTAC 2194 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | ||| | || | || | |||||||| Sbjct 2193 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTTCGCCTTCGTGGCGG 2144 >seq11802 Length=78489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | |||||||| ||| || | || || || ||| | Sbjct 57209 ATGCAGATCTTTGTAAAAACTTTAACTGGGAAGACTATCACTCTCGAGGTTGAGAGCTCA 57150 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||| ||||| |||| ||| | Sbjct 57149 GACACAATTGATAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 57092 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| ||| | || || | || | | | | || |||| Sbjct 57091 AGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 57032 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || | ||| | ||||| ||||| || Sbjct 57031 ACATCCAAAAGGAGTCCACCCTCCACCTTGTTCTCCGTTTACGTGGTGG 56983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355170428676996