Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2656 96.9 3e-15 seq87509 87.8 2e-12 seq72910 86.0 5e-12 seq140549 82.4 7e-11 >seq2656 Length=23473 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| || || || ||||||| ||| || || ||| || ||||| Sbjct 20283 AAATATCTGCATACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTAT 20224 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 |||||||| |||||||| | | | || ||||| || || || |||||||| | ||||| Sbjct 20223 GTTATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTG 20164 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | || || || ||||| || | | | | || || Sbjct 20163 CTGGTCTGGGGGAATCCCTTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTGTC 20104 Query 39225 GCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTG 39281 ||| ||| || |||| |||||| ||||||| |||| || || || |||||||| Sbjct 20103 ---CGAACTCTCAACCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTG 20047 Query 39282 CAT 39284 ||| Sbjct 20046 CAT 20044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||||||| || || || || || ||||| ||||| Sbjct 20046 CATGCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC 19987 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || | | | || ||||| ||||| || |||||||| | | ||||||||| | Sbjct 19986 TGCAAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGG 19927 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATC---GCTC 39228 || | | ||| |||||| ||| || | || | |||| | ||||| |||| Sbjct 19926 AGGAATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCG--ATGGTATCTGAGCTC 19869 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | ||||| | || ||||| | ||||||||||| || ||||| Sbjct 19868 ---TCAACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 19816 >seq87509 Length=10540 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || |||||||| || ||||| |||| || Sbjct 1271 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTC 1212 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | ||| | | || ||||| Sbjct 1211 GAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTG 1152 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || ||| || || || || | ||||| |||| Sbjct 1151 GATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGTGTGATTGTTTT 1092 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 1091 ACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 1059 >seq72910 Length=47125 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| || || || || || ||||| || || ||||| | || || Sbjct 43088 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 43147 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || || ||||||||||| | || | || || |||||| Sbjct 43148 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 43207 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || | ||| | | | || ||| || || || || | ||||| | | Sbjct 43208 GATCTT-TGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCT 43266 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||| || ||||| || ||||| |||||||| Sbjct 43267 TACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 43300 >seq140549 Length=546721 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| ||||| || || | || |||||||| || || ||||||| Sbjct 235018 CTTTTTGGATATTATAATCTGCAAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 235077 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | ||||| ||||||| |||||| Sbjct 235078 TCAGACGTTGCTGGTCCGGTGG 235099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428710352339324