Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq68600 86.0 5e-12 seq68234 86.0 5e-12 seq35257 82.4 6e-11 seq2656 82.4 6e-11 >seq68600 Length=37585 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--AT 101084 ||||| | || | ||| || || || |||||||||||||| || ||| || || || Sbjct 35096 AACACAAGATGGAGAGTGGAGTCCTTCTGAATATTGTAATCAGC--AAGTATTCGACCAT 35153 Query 101085 CTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGT 101144 |||| | |||||| || ||| | || | ||||||||| ||| || | ||||| |||| Sbjct 35154 CTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTTCCTTGT 35213 Query 101145 CGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAG 101204 | ||||||| ||| |||| | | | || || ||| | |||| ||||| | Sbjct 35214 CTTGAATTTTTGTTTTAACATTGTCAATAGTGTC---GGAGTTAACCTCGAGTGTAATGG 35270 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || || || | ||| |||| ||| |||||||| Sbjct 35271 TCTTTCCAGTTAGTGTCTTAACAAAGATTTGCAT 35304 >seq68234 Length=173017 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || |||| ||| | ||||||||||| || ||||||||||| |||| |||| | Sbjct 57366 CTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCCAGAGTTCGACCA 57425 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 |||||||| ||||| || ||| | || ||||| || ||||| || | ||||||||| Sbjct 57426 TCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGTATCCCTTCTTTG 57485 Query 101144 TC 101145 || Sbjct 57486 TC 57487 >seq35257 Length=66376 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 ||||| || |||||||| || || || || | ||| | |||||||||||| || || Sbjct 832 GTTGACTCCTTTTGAATGTTATAGTCAGCGAGAGTCCTCCCATCTTCCAATTGCTTTCCT 891 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| |||| ||||| || || || || | |||||| ||||| ||||||| || Sbjct 892 GCAAATATCAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGAATTTTTGCCTTA 951 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | | ||| || | | | ||| | || || ||||| || || || || Sbjct 952 ACATTGTCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAAGGTC 1011 Query 101222 TTAATAAAAATTTGCATT 101239 |||| ||| ||||||||| Sbjct 1012 TTAACAAAGATTTGCATT 1029 >seq2656 Length=23473 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | |||||||| || |||||||||||||| || | || | ||| || Sbjct 20025 CACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCAAGGGTCCTTCCATCCTC 19966 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | |||||| || ||| |||| | ||| || |||||| || | || || ||||| Sbjct 19965 AAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 19906 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 || ||| || |||| | | | || |||| | | ||| | ||| || || || Sbjct 19905 GATCTTTGCCTTTACATTGTCGATGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTT 19846 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||| || ||||||| |||||| ||||| Sbjct 19845 GCCCGTTAAAGTTTTAACAAAAATCTGCAT 19816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408864218158932