Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq75959 237 1e-57 >seq75959 Length=145061 Score = 237 bits (262), Expect = 1e-57 Identities = 566/850 (67%), Gaps = 7/850 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| |||||||| Sbjct 63061 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAC 63120 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| || ||| | | ||| | | ||||| ||||| || Sbjct 63121 GGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAACAATCTATCAGCCACG 63180 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 ||||| || || | |||||| | || | || ||||| | | | |||| || ||||| Sbjct 63181 AATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG-CGCACAAGGCAGCGC 63239 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || |||||| |||||| || || |||| | || | || | | || Sbjct 63240 GTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCTTAACTCGTTC 63299 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | || | ||| | | | | | ||||| ||||||||||| |||||||| Sbjct 63300 CTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCAAACAAGCAAAATCACAGTGCAAACC 63359 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||| || ||||| ||||| || || |||||||| |||||||| || | |||||| Sbjct 63360 TTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTT 63419 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| |||||||| || ||||| || || || ||||| || ||||| || Sbjct 63420 TAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTCCACACAAGCAAATGC 63479 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || || || | | || | || ||| ||||| || |||||| || || Sbjct 63480 AACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGTGCCCACTTCGC 63536 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810 || |||| ||| || || || || | | ||| |||||| | |||||||| | Sbjct 63537 CTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGA 63596 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | || |||| |||| || || || ||||| || ||||| || ||||| || || Sbjct 63597 GTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGC 63656 Query 4871 AATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929 || || || ||||| |||||| | || || | ||||| ||||| || || ||| Sbjct 63657 GATTTGGAAGCCGTAGAAAGCA-CGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTC 63715 Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | ||| |||||| || || ||||| ||| || ||||| || | ||||||| | Sbjct 63716 CGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGA 63775 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || | | |||| | || | || ||| |||||| | |||| || |||||| | Sbjct 63776 TGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGA 63835 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 |||| ||| ||||||| || || ||| |||||||||||||| |||||| | || | Sbjct 63836 CTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 63895 Query 5110 ACTGAATCGG 5119 | ||||| || Sbjct 63896 ATTGAATTGG 63905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426219205789484