Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq75405 102 1e-16 seq113574 91.5 2e-13 >seq75405 Length=32469 Score = 102 bits (112), Expect = 1e-16 Identities = 137/187 (73%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 77882 AGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCA 77941 |||||||| | | |||||||||||| | ||||| | | ||||| || || ||||| Sbjct 6495 AGATTTGTTTTTAC-CTCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCA 6553 Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001 | ||| |||||||||| ||| |||| || | || ||||| | ||||| | | || Sbjct 6554 ACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGACCAT-TGCTTT 6612 Query 78002 -AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 |||| || |||||| |||||||| | ||| |||||| || |||||||||| | || Sbjct 6613 GGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGAT 6672 Query 78061 GTTCTTC 78067 ||||||| Sbjct 6673 GTTCTTC 6679 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | || ||||| ||||| || |||||| ||| ||| | | || Sbjct 7337 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 7396 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 || || | || || ||||| || || | ||| || ||||| || | || | ||||| Sbjct 7397 ATAAGTCTTGATGGCAGATTCGATATCATCCTTG-TGGATTCCAACAGAAACTCTCATCA 7455 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||||||| || |||||||| || || ||| || || || | ||| || |||| Sbjct 7456 ACATATGTTGTGGTCTTTCTACAACATTTCCATTAATCTTAAAGAGGTAAGACCGCTCCA 7515 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| |||||||| || | || |||||| || || || || || Sbjct 7516 AGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 7564 >seq113574 Length=79877 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||||||||| ||||||||||| || |||||| || ||| | | || Sbjct 17478 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17537 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||| | || | ||||| || || | ||| || || || || | ||| | ||||| Sbjct 17538 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 17596 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || || ||||| || ||| | || || || | ||| || | || | Sbjct 17597 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 17656 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||||||||| || || || || Sbjct 17657 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 17705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693283387278720