Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq75959 147 3e-30 seq75405 109 8e-19 seq113574 104 3e-17 >seq75959 Length=145061 Score = 147 bits (162), Expect = 3e-30 Identities = 562/876 (64%), Gaps = 16/876 (2%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || | ||||| || |||||||| || |||| || || Sbjct 63045 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 63104 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||||||||| | |||| || | || | | | || || | | Sbjct 63105 CTCCATCCAATCAAACGGATTCTGAGCATTGTACAACTTATCATAACCCAAAGCATCCAA 63164 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || |||||| || |||||||| || || | |||||| || | ||||||||| | || Sbjct 63165 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 63224 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || || || || | |||||| ||| || |||||||| | | || Sbjct 63225 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 63284 Query 46578 CGATGTTACTGTTTCCTCA-----CTTGGTGGATGCATCAAATGTTTAAACATTAAACAT 46632 | ||| ||||||| ||| || | | |||| | || || |||| Sbjct 63285 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTT--AACAAACTATAAAGCA---AACAA 63339 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 ||||||||||| || | ||||| || || ||| || ||||| || || || | ||| Sbjct 63340 GCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCA 63399 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATG 46752 ||||||| || |||||||| | ||| |||||||| ||| |||||| || || || Sbjct 63400 GGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATA 63459 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCATCATTATGAATCC 46810 ||||| ||| || ||||| || | | ||||| || || | | | |||| Sbjct 63460 CCTTCCACACAAGCAAATGCAACCA--AACGCTCCGCAAATGTTTCGGAACCGTCGATCC 63517 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | | | | ||||| | ||||| |||| ||||| || || || || | || || | Sbjct 63518 AACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 63577 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 | ||||||| ||| || || | || | |||| | ||||| ||||| || | Sbjct 63578 ATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGG 63637 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 |||| ||||||||||| || || || || ||||| ||| | || || | || || | Sbjct 63638 AATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGA 63697 Query 46991 CCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049 | ||| | || | | ||| | | | || || || || || || || || ||| Sbjct 63698 CTTCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 63756 Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTG 47109 || || | ||||| | || |||| |||| ||| || || | | ||||| | | Sbjct 63757 AAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGG 63816 Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 ||||| |||| ||| ||||| ||||| |||||||| || || |||||||| ||| Sbjct 63817 GTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 63876 Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAATA 47205 || | ||| || | | ||||| || || || ||| Sbjct 63877 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 63912 >seq75405 Length=32469 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | || ||||| ||||||||||||||| ||| ||| | | || Sbjct 7337 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 7396 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || || | || | | ||| ||||| | ||| || ||||| |||| || | ||||| Sbjct 7397 ATAAGTCTTGATGGCAGATTCGATATCATCCTTG-TGGATTCCAACAGAAACTCTCATCA 7455 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||||||| || |||| ||||||| || ||| || || || | ||| || |||| Sbjct 7456 ACATATGTTGTGGTCTTTCTACAACATTTCCATTAATCTTAAAGAGGTAAGACCGCTCCA 7515 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | ||||| |||||||| || | || |||||| || || || || || Sbjct 7516 AGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 7564 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | |||||| ||| ||||| || || |||||| ||| |||| || Sbjct 6509 CTCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCAACAATCTGCCAATCC 6568 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 |||| ||| | ||||| | || ||||| | ||||| | | || || | || ||||| Sbjct 6569 AGGAGCCTCACTTGGACAAAATAAAGACCATTGACCAT-TGCTTTGGACTCTTTCCATAA 6627 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 | |||||||| | ||| |||||| || |||||||||| | | ||||||| Sbjct 6628 AAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGATGTTCTTC 6679 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTAT 76329 |||||| || ||||| |||||||| ||||| ||| ||| | | | || | || || Sbjct 6097 AAGAGCAATTGATGCAAGATTACACACGGCAGTTTCAGTAGGACTTGTGTACTCAATAAT 6156 Query 76330 CTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTT 76389 || || || | ||| | |||||||||| ||||||||||| |||||||| ||| | || Sbjct 6157 TTCAGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTTTGCTGGTTGCTTTTTCTATT 6216 Query 76390 ACATGAGTCCT 76400 ||| || |||| Sbjct 6217 ACAAGAATCCT 6227 >seq113574 Length=79877 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| ||||| ||||||||||||||||||||| || ||| | | || Sbjct 17478 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 17537 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||| | || || | ||| ||||| | ||| || || || |||| || | ||||| Sbjct 17538 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 17596 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || || || | ||||||| ||| | || || || | ||| || | || | Sbjct 17597 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 17656 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||||||||| || || || || Sbjct 17657 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 17705 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | |||||| ||||||| ||| | || | || ||| |||| ||| || Sbjct 17056 ACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCC 17115 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||| ||||| ||| ||||| || || | ||| Sbjct 17116 ATTTGATGTCCCATTTGTTCCACGAATGTAACTCCCAATAGCACGTATGTTGTGCACAGA 17175 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||| || || ||| || | |||||| || | || ||||| || Sbjct 17176 AACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCCTTAAGAGTATCATATAT 17235 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| ||||| || || ||||| | || || |||||| Sbjct 17236 ACCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 17278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711512559279360