Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq64140 720 0.0 >seq64140 Length=931 Score = 720 bits (798), Expect = 0.0 Identities = 708/914 (77%), Gaps = 0/914 (0%) Strand=Plus/Minus Query 68308 TCCAGGTTACGGATATAGTTCATGACAATATTTACATTGGTCCAGCCACCAGCTTGCATG 68367 |||||||| | ||| |||||||| ||||| || |||||||||||||||||||| |||||| Sbjct 920 TCCAGGTTTCTGATGTAGTTCATCACAATGTTCACATTGGTCCAGCCACCAGCCTGCATG 861 Query 68368 ATCTCCGGTATTGAAACTCCAGCGCGGGCCATATCTCGCGCGGCTCCGACACGGGCACTG 68427 || || || || || || ||||| | |||||| || | || || || || | |||| | Sbjct 860 ATTTCAGGGATGGACACACCAGCCCTGGCCATGTCCCTGGCAGCACCCACTCTGGCAGAG 801 Query 68428 TGTCCAGACCAGGCCAGGTATCTCTGACCAGAGTCATCCTTAGCGCCGTAAATCAATCGA 68487 || ||||||||||||||||||||||| |||||||||||||| || || || |||| || Sbjct 800 TGGCCAGACCAGGCCAGGTATCTCTGCCCAGAGTCATCCTTGGCACCATAGATCAGGCGG 741 Query 68488 TGAGTTGCTTCAAAAATCCCTTCCAGGGCGCGAGTTGATAGCTGGCTGGTGGCAGATGGC 68547 || || || ||||| |||||||||||||| || || || || ||| ||||||||| || Sbjct 740 TGGGTGGCCTCAAAGATCCCTTCCAGGGCCCGGGTGGACAGTTGGGAGGTGGCAGAAGGG 681 Query 68548 GCGGCAACACCATTTTTTCTGACCCGGCAAAACAGGTAGTTATTAGGATCATCAGCTACA 68607 || || |||||||| |||||||||||||| ||||||||||| || || |||||||| ||| Sbjct 680 GCAGCCACACCATTCTTTCTGACCCGGCAGAACAGGTAGTTGTTGGGGTCATCAGCCACA 621 Query 68608 CCAGAGACAGAAATCCATCGCTCGACCAGTTTAGTTACCCCCAGGCTAAGTGCCTTCTCT 68667 ||||| ||||| ||||||| ||| ||||| || || ||||||||| || |||||||| Sbjct 620 CCAGACACAGAGATCCATCTCTCCACCAGCTTGGTAACCCCCAGGGACAGGGCCTTCTCC 561 Query 68668 ACACCTGCGGCGCTAACCAGCGTTTTCGTTCTGCCAATATGGATTAACATTCTCCCACCG 68727 ||||| || | | ||||| || || || |||||||| ||||| | |||||||||||| Sbjct 560 ACACCAGCTGTGGACACCAGGGTCTTGGTCCTGCCAATGTGGATCAGCATTCTCCCACCA 501 Query 68728 TCAGTACGTGAGATATCTTTAACCCTGATCCTGGCAATTTCTGCTATACGTAGCAGGGTA 68787 || || || ||||| || || || ||||| ||||||||||| || || || |||||||| Sbjct 500 TCGGTGCGGGAGATGTCCTTCACTCTGATTCTGGCAATTTCGGCAATGCGCAGCAGGGTG 441 Query 68788 TTATAAGCAATCCCAAGAAATGCCAGATTACGTATATCCTGGCAGCGATCGCTATTTTCC 68847 || || ||||| || || || ||||| || | || |||||||| | || || ||| Sbjct 440 TTGTAGGCAATGCCCAGGAAGGCCAGGTTCCTGATGTCCTGGCATCTGTCAGAGTTCTCC 381 Query 68848 ATGAGTGAACGAACCTGGTCGAAATCAGTGCGTTCGAACGCCAATGCCTGTTTTGCACGC 68907 || || || | || ||||| || ||||||||||| || |||| ||||| || || | | Sbjct 380 ATCAGGGATCTGACTTGGTCAAAGTCAGTGCGTTCAAAGGCCAGGGCCTGCTTGGCTCTC 321 Query 68908 TCACCGGCATCAACGTTTTCTTTTCGGATCCGTCGCATGACCAGTGAAACAGCATTGCTG 68967 || || ||||| || || || |||| ||| | | ||| ||||| || ||||||||| | Sbjct 320 TCCCCAGCATCCACATTCTCCTTTCTGATTCTCCTCATCACCAGGGACACAGCATTGGAG 261 Query 68968 TCACTTGGTCGTGGCAGCCCGGACCGACGATGAAGCATATTTAGCTGGCCCAAATGTTGC 69027 ||| || || ||||| || || | | || ||||| || |||||||||| || || Sbjct 260 TCAGAAGGGCGAGGCAGGCCAGATCTCCTGTGCAGCATGTTGAGCTGGCCCAGGTGCTGT 201 Query 69028 TGGATAGTTTTTACTGCCAGACCGCGCGCCTGAAGATATAGAAGATAATCGCGAACATCT 69087 ||||| || || || ||||| || | || || || || || || || || | ||||| Sbjct 200 TGGATGGTCTTCACAGCCAGGCCTCTGGCTTGCAGGTACAGGAGGTAGTCCCTCACATCC 141 Query 69088 TCAGGTTCTGCGGGAAACCATTTCCGGTTATTCAACTTGCACCATGCCGCCCACGACCGG 69147 |||||||| || || |||||||||| ||| |||| ||||||||| || ||||| || | | Sbjct 140 TCAGGTTCAGCAGGGAACCATTTCCTGTTGTTCAGCTTGCACCAGGCAGCCCAGGATCTG 81 Query 69148 CAAACGGACAGAAGCATTTTCCAGGTATGCTCAGAAAACGCCTGGCGATCCCTGAACATG 69207 || || ||||| ||||| |||||||| || ||||| || ||||| | |||||||||||| Sbjct 80 CACACAGACAGGAGCATCTTCCAGGTGTGTTCAGAGAAGGCCTGCCTGTCCCTGAACATG 21 Query 69208 TCCATCAGGTTCTT 69221 |||||||||||||| Sbjct 20 TCCATCAGGTTCTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330255769400968