Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq75959 132 5e-26 >seq75959 Length=145061 Score = 132 bits (146), Expect = 5e-26 Identities = 364/557 (65%), Gaps = 3/557 (1%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| ||||||||||| || | ||||| ||||| |||||| || || || || ||| Sbjct 63334 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTT 63393 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 ||||| |||||||| || || ||||| | ||| ||||| ||| || ||| || || Sbjct 63394 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAA 63453 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 |||||||| || ||| ||||| || || | ||| |||||||| | || | Sbjct 63454 AAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTT---TCGGAACCG 63510 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 ||||| | || ||| || |||||| | ||||| || || |||| ||| Sbjct 63511 TCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCG 63570 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 || | ||||||| ||| || | || || | || | || | ||| ||| Sbjct 63571 CGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTAC 63630 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 || || ||||| || |||||||| || || || || || || ||| | || || | Sbjct 63631 ATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCA 63690 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||| || || || | || ||| |||| ||||| ||| || || || || Sbjct 63691 ACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCG 63750 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 || || || ||||| |||| | || ||||| ||||| | | | || ||| ||| Sbjct 63751 GCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAG 63810 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | | ||||| |||||||| ||||| ||| | ||||| ||| || ||||| Sbjct 63811 TGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTT 63870 Query 24046 TTATACATTAGCCAAAT 24062 || |||||| |||||| Sbjct 63871 TTGTACATTTCCCAAAT 63887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520447970407200