Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq476 208 2e-49 seq544 118 3e-22 >seq476 Length=815 Score = 208 bits (230), Expect = 2e-49 Identities = 317/445 (71%), Gaps = 5/445 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| ||||||| || || || || Sbjct 382 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 323 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | || |||||||| Sbjct 322 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAC 263 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || ||||| |||||||||| || || Sbjct 262 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATA 203 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| ||||||||||| || ||||| ||| |||| |||| Sbjct 202 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 144 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | ||||||| || | | | | Sbjct 143 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCG 85 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 |||| ||| |||| ||||| || |||||| |||| || | |||| ||| ||| Sbjct 84 TCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGC 25 Query 19709 TGTGTTTCTCG-TTTACCCATTTGG 19732 ||| ||||| | | |||||| |||| Sbjct 24 TGT-TTTCTTGATCTACCCAATTGG 1 >seq544 Length=768 Score = 118 bits (130), Expect = 3e-22 Identities = 167/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 20046 CGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATG 20105 ||||| ||||| ||||| || || ||| || || || || || ||| | || | | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 20106 GGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 || || ||||||||||||||||||| |||||||| || || ||||| || || |||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 20166 -GTCAACGGAAAGATAATCCCAACATGGGCTGATGT-ATTAAATAGAGCTAACCTCGGAT 20223 ||||| ||| |||| || ||||||||| | ||| | | || ||||| | Sbjct 121 AGTCAA-GGACGTGTAATTAATACTTGGGCTGATATCATT--ACCGTGCGAACCTTGATA 177 Query 20224 TTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 | ||||||||||| || || |||||||||| ||| || || || ||||| Sbjct 178 TGGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144437653223556