Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq476 187 4e-42 seq544 150 3e-31 >seq476 Length=815 Score = 187 bits (206), Expect = 4e-42 Identities = 283/399 (71%), Gaps = 3/399 (1%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 402 TTGGATGGTTTGGTGTTTTAATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 344 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 343 ATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 284 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | ||||| |||||||| || || ||||| || |||| |||| || || Sbjct 283 TCTCTACTTTATGGAAACAACATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATA 224 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || || |||||||| ||| | ||||||| ||| | ||||||||| Sbjct 223 GGTTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGT 164 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 163 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 104 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||| | || | |||| |||||||||| |||||||| |||||| |||||||| Sbjct 103 GAGTGGGAGC-TTAGTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 45 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCA 212007 || || |||| ||| ||||| ||| | | |||||| Sbjct 44 CCCGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCA 6 >seq544 Length=768 Score = 150 bits (166), Expect = 3e-31 Identities = 169/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 |||||||||||||| || | |||||||| | || | ||||| || || | ||||| Sbjct 7 TTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATT 66 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 |||| ||||| |||||||||||||| ||||| ||||||||||| || |||||| ||| Sbjct 67 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT-AGTCA 125 Query 212452 GGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 | | | || || |||||||| |||| || | || | || ||||||| ||||||||| Sbjct 126 AGGACGTGTAATTAATACTTGGGCTGAT-ATCATTACCGTGCGAACCTTGATATGGAAGT 184 Query 212511 TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||| ||| | ||||| || | ||| || || ||| |||| Sbjct 185 TATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807531972693560