Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq7 327 1e-84 seq476 194 2e-44 seq544 127 2e-24 >seq7 Length=7073 Score = 327 bits (362), Expect = 1e-84 Identities = 603/882 (68%), Gaps = 29/882 (3%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || |||||||| || | || ||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || ||||| || ||||| | || || ||| | || || || || ||| Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAATTTCTTA 678 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 ||||| ||||| || || |||| | || | | | ||| | ||||| | |||||||| Sbjct 677 ACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGT 618 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 ||||| ||||| |||||| || || |||| |||||||||||| ||||||| ||||| Sbjct 617 CCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTT 558 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || || ||||| | || ||||| |||||||||||||| | || || || |||| || Sbjct 557 GCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGA 498 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | || ||||| || ||| | |||||||| || ||||| || || Sbjct 497 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 438 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | || || || |||||| |||||||| | |||||||||| || ||| ||||| Sbjct 437 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGC 378 Query 172275 GTCGCAGCAATCTTTCGTTATAT----TTTATTCATACAGGGTTTCCACAATATAACTCT 172330 || ||||| || ||||| | || ||| |||| ||||||| || ||| || | Sbjct 377 GTAGCAGCTATATTTCGATTCATCCTCTTTTTTCA---AGGGTTT-CATAATTGGACGTT 322 Query 172331 TAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCAT 172390 || ||||||||||||||||| || || ||| || | || | || || ||||| || || Sbjct 321 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTAT 262 Query 172391 ACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAA 172450 |||||||| || ||| | || || || | |||||| || | | Sbjct 261 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGAT 219 Query 172451 GATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTAT 172510 | | ||| |||| ||| | || || | || || || | |||||||||||| || Sbjct 218 GGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAAT 163 Query 172511 GATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATT 172570 | | || |||||| | || ||||| || || ||||| | || ||||| || ||| | | Sbjct 162 GGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTG 103 Query 172571 CTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTAT 172630 ||||| ||| ||||||| || ||||| || | ||| | |||| || | || | Sbjct 102 GTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGT 43 Query 172631 CGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATC 172672 || ||||| || || ||||| | || || |||||||| || Sbjct 42 AGTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 194 bits (214), Expect = 2e-44 Identities = 294/414 (71%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| ||| Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 382 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCC 324 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 323 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 264 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 ||| || || ||||| | |||| |||| || ||||| || ||||| || || || Sbjct 263 CATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 204 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||| || | | || || ||||| ||||| || |||||||| | || || | Sbjct 203 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 144 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | || ||||||||| | ||||||| || | | | | Sbjct 143 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCG 85 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 171078 ||||| ||| |||||||||| ||| ||||| ||||| || || |||||| Sbjct 84 TCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGT---TGCAGC 34 >seq544 Length=768 Score = 127 bits (140), Expect = 2e-24 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 171422 CGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATG 171481 ||||| |||||||||||||| || | | |||||||| || | ||||| || || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 171482 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 171541 ||||| | || ||||| |||||||| || || ||||| ||||||||||| || || ||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 171542 GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATG 171601 | ||| | | || |||| ||| || | || | || ||||||| ||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGAT-ATCATTACCGTGCGAACCTTGATATG 179 Query 171602 GAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 171648 ||||||||||||||| | ||||| || | ||| || ||||||||||| Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570252397643640