Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq7 461 9e-125 seq476 197 2e-45 seq544 192 7e-44 >seq7 Length=7073 Score = 461 bits (510), Expect = 9e-125 Identities = 621/861 (72%), Gaps = 8/861 (1%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| |||||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || ||||||||||| || ||||| ||||| | ||| ||| ||| ||||| Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGC---TAGTTCCTATTTGGAAGGCTGC-AATTT 682 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | || || ||||| || ||||||||| | | | | |||||| | | ||||| || Sbjct 681 CTTAACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATG 622 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| | ||||| ||||| | | ||||| || | || || || ||| |||| Sbjct 621 GGGTCCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTT 562 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || |||| || || || | || ||||| || ||||| || ||||| || | Sbjct 561 TGTTGCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGC 502 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | || || | || ||||| ||||| || || || |||| ||| |||||||| || Sbjct 501 TCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTT 442 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| ||||| || || || ||||| || || ||||| ||||||||||||| || || Sbjct 441 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 382 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 ||| || ||||| |||||| ||||| | || || | || || || ||||| |||||| | Sbjct 381 TGGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTT 322 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || ||||||||||||||||| ||| | | |||| ||| ||||| | || || Sbjct 321 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTAT 262 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 261 TCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 202 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || || Sbjct 201 TGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 142 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||||||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 141 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 82 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || || | || | |||| ||| || |||| | ||||||| || || || || Sbjct 81 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCT 22 Query 168136 TCGTGCTTATGACTTTGTGTC 168156 || || ||||||||||| || Sbjct 21 ACGCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 197 bits (218), Expect = 2e-45 Identities = 295/413 (71%), Gaps = 7/413 (2%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| |||| |||||||| | ||||| || || | ||| | ||||| Sbjct 415 AACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGATCCCTACCTTATTGACCGCAACT 356 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || |||| ||| | || || ||||| || ||||| ||||| || ||||| Sbjct 355 -TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 297 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257 || || | || |||||| | ||||| |||||||| || || ||||| || | || | Sbjct 296 ACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTATTTCAGGTGCCATTATTCCTAC 237 Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317 | || || || || ||| | ||||| || || || |||||||| ||||| |||||||| Sbjct 236 TTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAA 179 Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTAT 166377 ||| | || || |||||||||| | || | || | |||||| | | || | | Sbjct 178 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 119 Query 166378 GCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 166437 |||||||||||||| ||||| | | | ||| || |||||||| ||||||||| Sbjct 118 TGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCGTCTAGGTATGCGACCTTGGATTGCT 60 Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCC 166490 || ||||| || || || |||||||| || | || || ||| || |||| || Sbjct 59 GTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 192 bits (212), Expect = 7e-44 Identities = 182/231 (79%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 166810 CGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTT 166869 || ||| | ||||||||||| || || |||||||| || ||||||||||| |||||| | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 166870 GGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGAT 166929 ||| ||||||| ||||| |||||||| || |||||||| |||||||| ||| | | ||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 166930 GGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATG 166989 |||| || ||||| | || |||||||| ||| || | ||||||| || | |||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATATCAT-TACCGTGCGAACCTTGATATG 179 Query 166990 GAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCT 167040 ||||| ||||| || ||||||||||| | ||| ||||| || || |||||| Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567215684989600