Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq7 477 1e-129 seq476 248 1e-60 seq544 192 7e-44 >seq7 Length=7073 Score = 477 bits (528), Expect = 1e-129 Identities = 622/858 (72%), Gaps = 2/858 (0%) Strand=Plus/Plus Query 6419 GAAACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTC 6478 |||||||||||||| || | ||||| || || ||||| | | |||| | || Sbjct 1 GAAACAAAGTCATAGGCGCGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATC 60 Query 6479 CAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAG 6538 || | ||| | || || ||||| | |||||||||||||| |||||| |||||| || Sbjct 61 CATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAA 120 Query 6539 GCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCT 6598 || | ||||| || || ||||| || || ||||| |||||||| ||||| || || || Sbjct 121 GCAACCCCAAAAATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCC 180 Query 6599 TCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTA 6658 |||| || || | ||| || ||| ||||||| |||||||||||||| |||||| Sbjct 181 GCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTA 240 Query 6659 TTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACA 6718 || ||||| |||||||| |||||||| || ||||| || | || || | ||| || || Sbjct 241 TTTTCTACGGTAGCACCATGAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACT 300 Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778 |||||||||||||| ||||| | |||||| || || || || || | ||||| | ||| Sbjct 301 CCCATCATATGAAATGGGTTCAACGTCCAATTATGAAACCCTTGAAAAAAGAGGATGAAT 360 Query 6779 CGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 6838 || ||||| ||||| || ||||| |||||||||||||||| ||||| || || ||| Sbjct 361 CGAAATATAGCTGCTACGCCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGA 420 Query 6839 TACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAG 6898 || || || || ||||| ||||| |||||||| ||| |||| || ||||||||||| || Sbjct 421 TAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAA 480 Query 6899 GGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGC 6957 || || | | || ||| || || | || || || || |||||||||||||| || | Sbjct 481 GGTCGCA-ATTGAACAGATCGAGCAAGTTCGAATTGACGTAGCATGAAACCTATTAGTCC 539 Query 6958 AAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAA 7017 || || || |||| || ||||||| |||||| || || | ||| ||| || || Sbjct 540 GAAAGCGCCATGGAAAGCAACAAAAGTCCATAGACCACCTAATTGACACCAACGAGTAAA 599 Query 7018 ATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGG 7077 ||||||||| ||||| ||||||||||| || | || ||||| | | | | |||||| Sbjct 600 ATCTCCCTGTGCTTCAGGACCCCATAGTAGCAATAAAGAATGCGCTAAACTATTAGCAGG 659 Query 7078 AGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTG 7137 ||| || || || ||||| | |||||| || || || | ||| ||| ||| | || || Sbjct 660 AGTAGAAACTGCGGCAGTTAAGAAATTGCAGCCTTCCAAATAGGAACTAGCCAATCCATG 719 Query 7138 AGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGC 7197 || ||||| || || || ||||| || |||| |||||| || | || | || || Sbjct 720 GGTATACCACGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGC 779 Query 7198 AGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCA 7257 | ||| || || | || || ||||| || ||||||||||| | || | | | ||| Sbjct 780 ACAAGGAAAGAGCAATAGGCCGGACCAGCCTACAAAAACGAAACGGTCCCTCCGTAACCA 839 Query 7258 GTCATCGAGTACATCAAA 7275 |||||| | | |||||| Sbjct 840 GTCATCCATAATATCAAA 857 >seq476 Length=815 Score = 248 bits (274), Expect = 1e-60 Identities = 320/438 (73%), Gaps = 3/438 (1%) Strand=Plus/Plus Query 8084 GGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATC 8143 || |||| | ||| ||||||| || || ||||| ||||| || ||||| ||| ||| Sbjct 7 GGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACGGGAGCTGAATATGCAACAGCAATC 66 Query 8144 CAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATA 8203 || || ||||||||||||||| || ||| |||||||||||||||||||| | | | Sbjct 67 CAAGGTCGCATACCTAGACGG-AACTAAGCTCCCACTCACGACCCATGTAACAAGCTACA 125 Query 8204 CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCA 8263 || | | |||||| | | || |||| |||||||||| ||||| | ||| |||||| Sbjct 126 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCA 185 Query 8264 AGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACA 8323 | || || |||||||| || || || ||||| | ||| ||||| ||||| ||||| | Sbjct 186 ACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATA 245 Query 8324 ACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATG 8383 | ||||| || || |||||||| ||||| | || || |||| || |||||||| || Sbjct 246 ATGGCACCTGAAATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATA 305 Query 8384 CCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGC 8442 || ||||| || || ||||||||||| | ||| |||| || || ||| | || || | Sbjct 306 CCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-AGTTGCGGT 364 Query 8443 GAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGA 8502 | | ||||| ||||| | ||||| ||||| || | || ||||| || | ||| Sbjct 365 CAATAAGGTAGGGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCT 424 Query 8503 GGTTACCCAGTTACAGAA 8520 |||| |||||||||||| Sbjct 425 AGTTATCCAGTTACAGAA 442 >seq544 Length=768 Score = 192 bits (212), Expect = 7e-44 Identities = 182/231 (79%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||| ||| | ||||||||||| || ||||| |||||||| |||| Sbjct 230 AGCAGCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAG 171 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 ||||||| | | || ||||| || || | ||||| ||||||| ||||| | Sbjct 170 GTTCGCACGGTAATG-ATATCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACCAC 112 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 ||| |||||||| |||||||| || |||||||| ||||| ||||||| ||| | |||||| Sbjct 111 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 52 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACG 7764 ||||||||| || || || ||||| || || ||||||||||| | |||||| Sbjct 51 GAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTGTAACGAACG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622106906135440