Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq7 489 2e-133 seq476 217 2e-51 seq544 178 2e-39 seq2 82.4 9e-11 >seq7 Length=7073 Score = 489 bits (542), Expect = 2e-133 Identities = 627/859 (73%), Gaps = 4/859 (0%) Strand=Plus/Minus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || ||||| |||||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | ||||| ||| |||| || || || ||| Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCT 181602 || || |||||||| ||||| |||||||| |||||| | || || ||| |||||| | Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AATTTCTT 679 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || || || || || || |||||| | | | | |||||| | | ||||| ||||| Sbjct 678 AACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGG 619 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 ||||||||| ||||| ||||| || ||| ||| | || || || ||| ||||||| Sbjct 618 TCCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGT 559 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG 181782 || |||| || || |||| || || ||||| ||||| | ||||| ||||||||||| Sbjct 558 TGCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCG 499 Query 181783 -TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCG 181841 ||| || | | ||||| || ||||| || || || || | ||| |||||||| || | Sbjct 498 ATCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTG 440 Query 181842 TCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCG 181901 | |||||||| || || ||||| || || || || |||||||||||||||| ||||| | Sbjct 439 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 380 Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 | || || || || || || ||| | ||||| | || || ||||||||||||||| | | Sbjct 379 GCGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGA 320 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTC 182021 | || || ||||||||||| ||||| ||| | |||| | || || || | || |||| Sbjct 319 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTC 260 Query 182022 ACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAG 182081 | |||| ||||| || |||||| | | | |||| ||||| |||||||| ||| | Sbjct 259 ATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 200 Query 182082 CATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGT 182141 | || | ||||||||| |||||||| ||||||||||| || || |||||||| |||| Sbjct 199 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 140 Query 182142 CTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 182201 | || || || || |||| ||| |||||| | ||||| |||||||||||| | |||| Sbjct 139 CCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 80 Query 182202 TTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 182261 | || || | ||| | |||| ||| | | || | | ||||| ||||| ||||| | Sbjct 79 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTAC 20 Query 182262 GTGCTTATGACTTTGTATC 182280 | || ||||||||||| || Sbjct 19 GCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 217 bits (240), Expect = 2e-51 Identities = 321/448 (72%), Gaps = 5/448 (1%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| |||| || | ||||| || || | || ||||| Sbjct 451 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 392 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| | ||||| || || | ||| | |||||| |||| || || |||||||||| Sbjct 391 GGTGTTTTAATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCAT 333 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 |||||||| || || || || ||||| || |||||||| || |||| || || | || Sbjct 332 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 273 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| |||||||| || || ||||| || ||||| |||| || || ||| | ||||| Sbjct 272 TGGAAACAACATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTT 213 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || || |||||||| ||||| |||| || ||| | || || |||||||||| | Sbjct 212 TTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 153 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 ||| | || | |||||| | |||| | | |||||||||||||||||||| || Sbjct 152 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT 93 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || || | |||||||| || ||||| ||| || |||||||| ||||| || || | Sbjct 92 TAGTT-CCGTCTAGGTATGCGACCTTGGAT-TGCTGTTGCATATTCAGCTCCCGTTGCAG 35 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCC 180184 | || ||||||| ||| | |||| || Sbjct 34 CTGCTACTGCTGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 178 bits (196), Expect = 2e-39 Identities = 181/233 (78%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 180504 CGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTG 180563 ||||| | ||||||||||| || || |||||||| || || |||||||||||||| | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 180564 GGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGAT 180623 || | ||||| ||||| |||||||| || |||||||| |||||||| ||| | ||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 180624 GGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCA--ACCGCGCTGGTCTGGGTA 180681 ||||||| ||||| | || |||||||| || || ||| |||| || || | || Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGA--TA-TCATTACCGTGCGAACCTTGATA 177 Query 180682 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 ||||||||||||| || ||||||||||| | ||| || || ||||| || ||| Sbjct 178 TGGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 >seq2 Length=25627 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 1601 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 1660 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 1661 CCTACTTGGGGAG 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610379243462040