Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq7 313 3e-80 seq476 196 6e-45 seq544 136 5e-27 >seq7 Length=7073 Score = 313 bits (346), Expect = 3e-80 Identities = 595/878 (68%), Gaps = 21/878 (2%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || ||||| || || |||| ||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | ||| || ||| | || || || || ||| || Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAATTTCTTA 678 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | ||| | | || | || ||||| Sbjct 677 ACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGT 618 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 ||||||||||| || ||| |||||||| ||| | || ||| |||||| ||||| Sbjct 617 CCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTT 558 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || || ||||| | || ||||| |||||||||||||| | ||||| || | || || Sbjct 557 GCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGA 498 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| |||||||||||||| || || || || | Sbjct 497 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 438 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 | || ||||| ||||||||||||||| |||||||||| || || || || Sbjct 437 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGC 378 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || ||||| || ||||| | ||| | || | ||||| || || || || ||||| Sbjct 377 GTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAAC 318 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| ||||| || || | || | || || |||| || |||||| Sbjct 317 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCAT 258 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || || | || || || | ||||| || |||| | Sbjct 257 GGTGCTACCGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 215 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 214 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTC 159 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | ||| Sbjct 158 ACCGCTAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 99 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 98 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 39 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATC 171406 ||||| || || ||||| | || || || ||||| || Sbjct 38 GGTCTGGCTCTGAACCTACGCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 196 bits (216), Expect = 6e-45 Identities = 288/404 (71%), Gaps = 3/404 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| ||||||| || |||| | || ||| | | ||| || || Sbjct 402 TTGGATGGTTTGGTGTTTTAATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 344 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || |||||||| || ||||| || ||||| || || || | ||||| || | || Sbjct 343 ATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 284 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | ||||| |||||||| || || ||||| || |||| | || ||||| Sbjct 283 TCTCTACTTTATGGAAACAACATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATA 224 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | ||||| |||||||| |||||||| ||| | |||||||||||||| || |||||| Sbjct 223 GGTTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGT 164 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | |||||| | ||||| | | |||||||| | Sbjct 163 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 104 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 ||||||| || | | | | |||| ||||| |||||||| ||||||||| || || Sbjct 103 GAGTGGGAGCT-TAGTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 45 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGG 169844 || || | ||||| ||||| ||||| | |||||| |||| Sbjct 44 CCCGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGG 1 >seq544 Length=768 Score = 136 bits (150), Expect = 5e-27 Identities = 163/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 170165 TACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCT 170224 |||||||||||||||| | || ||||| ||| || | ||||| || || | ||||| Sbjct 8 TACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTA 67 Query 170225 GCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACG 170284 |||| ||||| |||||| | ||||||||||| || |||||||| || |||||| | | | Sbjct 68 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGATAGTCAAG 127 Query 170285 GAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTA 170344 || | | || |||| |||| || || | || ||| | | ||||||||||| Sbjct 128 GACGTGTAATTAATACTTGGGCTGAT-ATCATTACCGTGCGAACCTTGATATGGAAGTTA 186 Query 170345 TGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||| | ||||| || | ||| || ||||||||||| Sbjct 187 TGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579196140391840