Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq7 410 1e-109 seq544 152 6e-32 >seq7 Length=7073 Score = 410 bits (454), Expect = 1e-109 Identities = 573/802 (71%), Gaps = 6/802 (1%) Strand=Plus/Minus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | ||||| || || || | || ||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| | ||| | || || ||| |||| |||||| | ||| Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| ||| | ||| |||| || | |||||| || ||| Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCT---AGTTCCTATTTGGAAGGCTGCAATTTC 681 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | ||||| || || ||| |||||| | | | | || || | | | |||||| Sbjct 680 TTAACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGG 621 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| |||||||| || ||||| ||| ||||||||||| |||||||| |||| ||| Sbjct 620 GGTCCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTT 561 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || | ||||| || || | | | || ||||||||||| | || || ||| | || Sbjct 560 GTTGCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCT 501 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| || |||||||||| ||| |||||||| ||| Sbjct 500 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTT 441 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || ||| || || || || ||||| || ||||| ||||||||||| || ||| Sbjct 440 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 381 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| |||| || || | ||| | | || | ||||| || || || ||||||||| Sbjct 380 GGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTG 321 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || ||||| || |||||||| || || || | ||||||| || ||||| | ||||| Sbjct 320 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATT 261 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 ||||||| ||| ||||| || || || | |||||| ||||| |||||||| ||| Sbjct 260 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 201 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 200 GCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 141 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || || || || |||| ||||| || || |||||| | ||||| || ||||| ||| Sbjct 140 TCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 81 Query 170084 GTGCCTGTTATGGGTCTTTGGA 170105 || || || | ||| | |||| Sbjct 80 GTACCAGTAACCGGTTTATGGA 59 >seq544 Length=768 Score = 152 bits (168), Expect = 6e-32 Identities = 173/231 (75%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 168619 CGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 168678 || || || ||||||||||| || || |||||||| || || ||||||||||| || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 168679 GGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 168738 || | ||| ||||| |||||||| || |||||||| |||||||| ||| | ||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 168739 GGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATG 168798 |||| || ||||| | || || ||||| ||| || |||| || || | |||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGAT-ATCATTACCGTGCGAACCTTGATATG 179 Query 168799 GAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 168849 |||||||||||||| ||||| || || | ||| || || || || |||||| Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574457076703080