Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq7 480 9e-131 seq476 269 3e-67 seq544 168 7e-37 >seq7 Length=7073 Score = 480 bits (532), Expect = 9e-131 Identities = 619/848 (73%), Gaps = 6/848 (1%) Strand=Plus/Minus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || |||||||||||||| || ||||| || || | || ||| Sbjct 845 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCTTT 786 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | ||| | || |||||| | || || || || || | || ||| Sbjct 785 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGTGG 726 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || || ||||| ||||||||| |||| || ||||| ||||||| |||| |||| Sbjct 725 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCAG 668 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||||||||| || | | | | |||||| | |||| || ||||||||||| || | Sbjct 667 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGCAC 608 Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503 | || ||||| | ||| ||| | || || || ||| ||||||| || |||| | Sbjct 607 AGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCATG 548 Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGT 165562 | ||||||| ||||| ||||||||||| ||||| || ||| | || || ||| || | Sbjct 547 GCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCAAT 488 Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622 | || || || ||||| || || ||||||| ||| || |||||||||||| || || Sbjct 487 -TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTC 429 Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682 || || || || || ||||| || ||||||| || || || ||| || || ||||| Sbjct 428 CTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCT 369 Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742 || || | ||| | ||||| | ||||| || ||||| ||||| ||||| || |||||| Sbjct 368 ATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCAT 309 Query 165743 ATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 165802 |||||||| ||||| ||| | |||| | ||| ||||| | || || ||||||| ||| Sbjct 308 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACC 249 Query 165803 GTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCT 165862 ||||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | Sbjct 248 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 189 Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922 ||||||| ||||||||| || |||||||| || || ||||| || ||||| || || || Sbjct 188 ACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTT 129 Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 128 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 69 Query 165983 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 166042 ||| | |||| ||| | | || | | ||||| ||||| ||||| || || |||||| Sbjct 68 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGAC 9 Query 166043 TTTGTATC 166050 ||||| || Sbjct 8 TTTGTTTC 1 >seq476 Length=815 Score = 269 bits (298), Expect = 3e-67 Identities = 327/439 (74%), Gaps = 5/439 (1%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 ||||| | ||| | ||| ||| | ||||| || || |||| ||||| || ||| | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | ||||| ||||| || || |||||||| | ||||||| Sbjct 382 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 325 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || ||||||||||||||||||||| | || || || | ||||| |||| Sbjct 324 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 265 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 |||| || || ||||| || |||| | || || || ||| | ||||| ||||| | Sbjct 264 ACATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 205 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 | |||||||| |||||| ||||||||||| | ||||| |||||||||| |||| | | Sbjct 204 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 145 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 | | |||||| | | ||| | | |||||||||||||||||||| || | | || Sbjct 144 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCC 86 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 |||| |||||||| ||||||||| |||||| || || || ||||||||||| || | | Sbjct 85 GTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTG 26 Query 164203 CAGTCTTCCTGGTCTATCC 164221 | || ||| || |||| || Sbjct 25 CTGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 168 bits (186), Expect = 7e-37 Identities = 178/233 (76%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 164541 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTT 164600 ||||| || ||||||||||| || || |||||||| || || ||||||||||| || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 164601 GGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGAT 164660 ||| || ||| ||||| |||||||| || |||||||| |||||||| ||| | | ||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 164661 GGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCA--ACCGCGCTGGTCTGGGTA 164718 |||| || ||||| | || |||||||| || | ||| |||| || || | || Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGA---TATCATTACCGTGCGAACCTTGATA 177 Query 164719 TGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771 ||||||||||||| || ||||| ||||| | ||| ||||| || || |||||| Sbjct 178 TGGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556908781450440