Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq7 282 5e-71 seq476 179 4e-40 seq544 131 2e-25 >seq7 Length=7073 Score = 282 bits (312), Expect = 5e-71 Identities = 587/878 (67%), Gaps = 21/878 (2%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || |||||||| || | || ||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || || |||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAATTTCTTA 678 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || ||||| || || |||| | | | ||| | | || | || ||||| Sbjct 677 ACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGT 618 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 ||||||||||| || || ||||||| ||| | || || ||||||| ||||| Sbjct 617 CCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTT 558 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || || ||||| | || ||||| |||||||||||||| ||||| || || | || || Sbjct 557 GCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGA 498 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||||| || || || || | Sbjct 497 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 438 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 | || | || || |||||||| ||| |||||||||| || ||| || || Sbjct 437 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGC 378 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || ||||| || ||||| | ||| | || | ||||| || || || || ||||| Sbjct 377 GTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAAC 318 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| ||||| || || | || | || || ||||| || |||||| Sbjct 317 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCAT 258 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | ||||| || ||| ||| Sbjct 257 GGTGCTACCGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT------ 216 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 215 ---GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTC 159 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 158 ACCGCTAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 99 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 98 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 39 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATC 173828 ||||| || || ||||| | || || |||||||| || Sbjct 38 GGTCTGGCTCTGAACCTACGCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 179 bits (198), Expect = 4e-40 Identities = 296/426 (69%), Gaps = 1/426 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| |||| ||| | ||| | |||| |||| ||||| ||||| | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || |||||||| || ||| Sbjct 382 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 323 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | ||||| ||| | || ||| | | ||||| |||||| Sbjct 322 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAC 263 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || || ||||| || |||| | || || |||||| | ||||| ||||| || Sbjct 262 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATA 203 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| |||| ||||||||||| |||||||||||||||||| | | | | Sbjct 202 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTT 143 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | |||||||| | ||||||| || | | | | Sbjct 142 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCGT 84 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 |||||||| |||| ||||| ||| ||||||||||| || || |||| || |||| Sbjct 83 CTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCT 24 Query 172240 GTGTTC 172245 || ||| Sbjct 23 GTTTTC 18 >seq544 Length=768 Score = 131 bits (144), Expect = 2e-25 Identities = 163/222 (73%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 172585 CACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 172644 |||||||||||||| | || ||||| ||| || | ||||| || || | ||||| | Sbjct 10 CACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGC 69 Query 172645 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGT 172704 || ||||| |||||||| || |||||||| ||||||||||| || || ||| | | || Sbjct 70 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGATAGTCAAGGA 129 Query 172705 AAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATG 172764 | || ||| |||| ||| || | || | || ||||| | ||||||||||||| Sbjct 130 CGTGTAATTAATACTTGGGCTGA-TATCATTACCGTGCGAACCTTGATATGGAAGTTATG 188 Query 172765 CATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCT 172806 |||||| | ||||| || | ||| || ||||||| ||| || Sbjct 189 CATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588034286177360