Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq7 484 7e-132 seq476 268 1e-66 seq544 93.3 5e-14 >seq7 Length=7073 Score = 484 bits (536), Expect = 7e-132 Identities = 620/848 (73%), Gaps = 6/848 (1%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| || ||||| || || | || ||| Sbjct 845 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCTTT 786 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | ||| | || |||||| | || || || | || || || ||| Sbjct 785 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGTGG 726 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAG 168672 ||||| || || ||||| ||||||||| |||| ||| |||| ||||||| |||| |||| Sbjct 725 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCAG 668 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 || |||||| || || | | | |||||| | |||| || ||||||||||| |||| Sbjct 667 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGCAC 608 Query 168733 AAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 168792 | || ||||| | ||||||||| | || || || ||| ||||||| || |||| | Sbjct 607 AGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCATG 548 Query 168793 GGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 168851 | ||||||| ||||| ||||||||||| ||||| || ||||| || || ||| || | Sbjct 547 GCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCAAT 488 Query 168852 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 168911 | || || || ||||| || || ||||||| ||| || |||||||||||| || || Sbjct 487 -TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTC 429 Query 168912 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 168971 || || || || || ||||| || ||||||| || || || ||| || || |||| Sbjct 428 CTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCT 369 Query 168972 ATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCAT 169031 || || |||||| | ||||| | ||||| || ||||| ||||| |||| ||||||||| Sbjct 368 ATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCAT 309 Query 169032 ATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACA 169091 |||||||| || || ||| | ||||| | || ||||| | || |||||||||| ||| Sbjct 308 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACC 249 Query 169092 GTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGC 169151 ||||| |||||| | | | |||||||||| |||||||| ||| || ||| || Sbjct 248 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 189 Query 169152 ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 169211 ||||| | || || || ||||||||||| || || ||||| || ||||| || || ||| Sbjct 188 ACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTT 129 Query 169212 GGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 169271 || |||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 128 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 69 Query 169272 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 169331 ||| | |||| ||| | | || | | ||||| ||||| ||||| || || |||||| Sbjct 68 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGAC 9 Query 169332 TTTGTTTC 169339 |||||||| Sbjct 8 TTTGTTTC 1 >seq476 Length=815 Score = 268 bits (296), Expect = 1e-66 Identities = 319/429 (74%), Gaps = 3/429 (1%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | || |||||| | |||||||| || | || ||||| || ||| | ||||||||| Sbjct 433 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGATCCCT 374 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| ||||| || || ||||||||| | | ||||||||| || || Sbjct 373 ACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 315 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| |||| || || | ||||| |||||||| || || Sbjct 314 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTATTTC 255 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 ||||| || ||||| ||||| ||||| ||| | ||||| || || || |||||||| Sbjct 254 AGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGC 195 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 ||| || | || || ||||| |||||||||||||||| |||| | ||| | ||||| Sbjct 194 GGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTT 135 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | || ||||||||||||||||| || | | |||||| ||||| Sbjct 134 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCGTCTAGGTAT 76 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 ||| || ||||| ||||||||| || ||||| || || || || ||||||| ||| | Sbjct 75 GCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGTTTTCTT 16 Query 167516 CGTCTATCC 167524 |||| || Sbjct 15 GATCTACCC 7 >seq544 Length=768 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 |||||||| || |||||||| |||||||| || | |||||||| || || | Sbjct 79 TTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGATAGTCAAGGACGTGTAATT 138 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 ||||||||| || | | | |||||| || | ||||||||||||||| || ||| Sbjct 139 AATACTTGGGCTGATATCATTA-CCGTGCGAACCTTGATATGGAAGTTATGCATGAACGT 197 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074 |||||||| | ||| ||||| ||||| |||||| Sbjct 198 AATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560591875512400