Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq7 480 1e-130 seq476 210 3e-49 seq544 187 3e-42 >seq7 Length=7073 Score = 480 bits (532), Expect = 1e-130 Identities = 615/844 (73%), Gaps = 4/844 (0%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| |||||||| || || | || || Sbjct 845 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCTTT 786 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 785 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGTGG 726 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTG 183370 |||||||||||| | ||| ||||||| | ||||| ||| | ||||||| | || || | Sbjct 725 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCAG 668 Query 183371 TCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTC 183430 | || || |||||| | | | | |||||| | || |||| ||||||||||| | | Sbjct 667 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGCAC 608 Query 183431 AAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 183490 | || || ||| || ||||| ||| | || || || |||| |||||| || |||| | Sbjct 607 AGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCATG 548 Query 183491 GTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTA 183550 | || || | || || ||||||||||| || || || ||||||||||| | || Sbjct 547 GCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCAAT 488 Query 183551 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCC 183610 | || ||||| ||||| || || ||||||| ||| |||||||||||||| |||||||| Sbjct 487 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCC 428 Query 183611 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 183670 | || |||||||| ||||||||| ||||||||||| |||||||| || |||||||| | Sbjct 427 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTA 368 Query 183671 TCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATA 183730 | ||| ||||| | | || |||| || || || || |||||||| ||||| || |||| Sbjct 367 TATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATA 308 Query 183731 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAG 183790 ||||||||||||| ||| || | || | || | || | ||||| ||||||| || | Sbjct 307 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACCG 248 Query 183791 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCA 183850 |||| ||||| || | ||||||||| || ||||| |||||| || ||| | | | Sbjct 247 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 188 Query 183851 CTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCG 183910 |||||| ||||| || ||||| ||||| || || || || || ||||| ||||| || | Sbjct 187 CTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTG 128 Query 183911 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183970 ||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | | Sbjct 127 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 68 Query 183971 GTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATT 184030 || | ||| | | || |||| | | || || ||||| || || || || ||||| | Sbjct 67 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGACT 8 Query 184031 TTGT 184034 |||| Sbjct 7 TTGT 4 >seq476 Length=815 Score = 210 bits (232), Expect = 3e-49 Identities = 299/414 (72%), Gaps = 9/414 (2%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || | || ||||||||||| | |||||||| || | ||| | |||| | Sbjct 415 AACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGATCCCTACCTTATTGACCGCAA-C 357 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || | || ||| | || || ||||| || ||||| || ||||| || || Sbjct 356 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 297 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || |||| || || | ||||| |||||||| || || ||||| || | || | Sbjct 296 ACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTATTTCAGGTGCCATTATTCCTAC 237 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | ||||| |||||||| |||||||| || || ||||||| || Sbjct 236 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 177 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || |||||||||| |||| ||||| | |||||| | | || | || || Sbjct 176 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 120 Query 182120 ---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 |||||||| ||||||||||| ||| || ||| |||||||||| || ||||| Sbjct 119 TTGTTACATGGGTCGTGAGTGGGAGCTTAGTT-CCGTCTAGGTATGCGACCTTGGATTGC 61 Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCC 182230 ||| ||||| || ||||| || || || || ||||||| ||||| |||| || Sbjct 60 TGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 187 bits (206), Expect = 3e-42 Identities = 182/232 (78%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 182550 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTT 182609 ||||| || ||||||||||| || || |||||||| || || ||||||||||| || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 182610 GGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 182669 ||| | ||| ||||| |||||||| || |||||||| |||||||| ||| | ||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 182670 GGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGT-ATTGAACCGTGCTGGTCTTGGTAT 182728 |||| || ||||| |||| |||||||| ||| | ||| ||||||| |||| ||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATATCATT--ACCGTGCGAACCTTGATAT 178 Query 182729 GGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCT 182780 ||||||||||||||| ||||| || || | ||| || ||||| || |||||| Sbjct 179 GGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611678406093800