Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq7 475 4e-129 seq476 271 9e-68 seq544 192 7e-44 >seq7 Length=7073 Score = 475 bits (526), Expect = 4e-129 Identities = 607/830 (73%), Gaps = 6/830 (1%) Strand=Plus/Minus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| || ||||| || || | || |||| ||| ||| | ||| Sbjct 827 GACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 768 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || |||||||| |||||| | || Sbjct 767 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGTGGTATACCCATGGATTGGCT 708 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368 || ||| |||| || ||||| ||||||| |||| |||||||||||||| || || Sbjct 707 AGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCAGTTTCTACTCCTGCTAATA 650 Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 166428 | | | |||||| || | || || ||||||||||| || || || ||||| | | Sbjct 649 GTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGCACAGGGAGATTTTACTCGTT 590 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| | || || || ||| | ||||||||| |||| || ||||| | ||||| | Sbjct 589 GGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCATGGCGCTTTCGGACTAATAG 530 Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547 |||||||||| || || || ||| | ||||| ||| | | | || || || |||||| Sbjct 529 GTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCA 471 Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607 ||||| || |||| ||| |||||||| || ||| ||| || || || || || || ||| Sbjct 470 ATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGT 411 Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667 || || ||||||| || || || ||| || || |||| || || |||||| |||| Sbjct 410 CAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTC 351 Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGT 166727 || ||||||| || || || ||||| |||||||||||||||||||||| || || ||| Sbjct 350 TTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGT 291 Query 166728 ATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTAT 166787 | | || | ||| ||||| | || || ||||||| ||| ||||| || ||| | | | Sbjct 290 GTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTT 231 Query 166788 CAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACC 166847 |||||||||| |||||||| ||| || || || | ||||||| ||||||||| Sbjct 230 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACT 171 Query 166848 TATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT 166907 ||||||||||| || || ||||||| |||||| || || || || |||| ||| ||| Sbjct 170 TATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAAT 111 Query 166908 AAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCC 166967 || | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 110 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 51 Query 166968 ATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTC 167017 | || | | ||||| ||||| ||||| || || |||||||||||||| Sbjct 50 CTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 271 bits (300), Expect = 9e-68 Identities = 320/429 (75%), Gaps = 3/429 (1%) Strand=Plus/Minus Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCC 164832 ||| | ||| ||| | ||||||||||| | || ||||| |||||| | |||||||| Sbjct 433 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGATCCCT 374 Query 164833 TGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGA 164891 || | |||| || | ||| ||||||| || ||||| |||||||| || || || Sbjct 373 ACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 315 Query 164892 CATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTC 164951 ||||||||||||||||||||||| | || |||||| | || || |||||||| || || Sbjct 314 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTATTTC 255 Query 164952 TGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGC 165011 ||||| | |||| ||||| || || || | ||||| || || || |||||||| Sbjct 254 AGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGC 195 Query 165012 TGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTT 165071 ||| || | ||||||||||| ||||| ||||||||||| | | |||| | ||||| Sbjct 194 GGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTT 135 Query 165072 CCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTAT 165131 | | | ||||||||||| |||||||||||||||||||| || | | ||| || ||||| Sbjct 134 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCGTCTAGGTAT 76 Query 165132 GCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCT 165191 ||| ||||||||| || |||||| || || || || |||||| | || |||||| | Sbjct 75 GCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGTTTTCTT 16 Query 165192 GGTCTATCC 165200 | |||| || Sbjct 15 GATCTACCC 7 >seq544 Length=768 Score = 192 bits (212), Expect = 7e-44 Identities = 184/232 (79%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 165520 CGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTT 165579 |||||| | ||||||||||| || || ||||||||||| |||||||||||||||||| | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 165580 GGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGAT 165639 ||| ||||||| ||||| |||||||| || |||||||| |||||||| || | |||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 165640 AGTC-AGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTAT 165698 |||| || || | || |||||||||||| || ||||||| || | ||| Sbjct 121 AGTCAAGGAC-GTGTAATTAATACTTGGGCTGA-TATCATTACCGTGCGAACCTTGATAT 178 Query 165699 GGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGCT 165750 ||||||||||||||| ||||| ||||| | ||| || || ||||| |||||| Sbjct 179 GGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563644587706240