Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq476 188 8e-43 seq544 120 4e-22 >seq476 Length=815 Score = 188 bits (208), Expect = 8e-43 Identities = 294/419 (70%), Gaps = 1/419 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| || |||||||| Sbjct 433 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGATCCCT 374 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 373 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGAT 314 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| |||||||| || || Sbjct 313 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTATTTCA 254 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| || || || |||||||| Sbjct 253 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCG 194 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || || |||||||||||| || || || | | |||||| Sbjct 193 GCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTC 134 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | ||||||| || | | |||| |||||||| Sbjct 133 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCGTCTAGGTATG 75 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 74 CGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGTTTTCTT 16 >seq544 Length=768 Score = 120 bits (132), Expect = 4e-22 Identities = 155/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514 ||||||||||| || | | ||||||||| | |||||||| ||| | | |||||| || Sbjct 10 CACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGC 69 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGT 170574 || ||||| || ||||| ||||| || || |||||||| || | || ||| | || Sbjct 70 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGATAGTCAAGGA 129 Query 170575 AAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATG 170634 ||| || ||| ||||| || || | || | || ||||| | ||||||||| ||| Sbjct 130 CGTGTAATTAATACTTGGGCTGA-TATCATTACCGTGCGAACCTTGATATGGAAGTTATG 188 Query 170635 CATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 ||||| |||||||| || | ||| || || ||| Sbjct 189 CATGAACGTAATGCTCATAGCTTTCCTCTAGAC 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582831235834400