Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq476 241 4e-59 seq544 114 4e-21 >seq476 Length=815 Score = 241 bits (266), Expect = 4e-59 Identities = 320/443 (72%), Gaps = 1/443 (0%) Strand=Plus/Plus Query 36513 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 |||| ||||||| ||||| |||||| || |||||||| || |||||||| || ||| Sbjct 1 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACGGGAGCTGAATATGCAACA 60 Query 36573 CATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 36632 ||||| || | ||||||||| | ||||||| ||||| | || |||| |||| Sbjct 61 GCAATCCAAGGTCGCATACCTAGACGG-AACTAAGCTCCCACTCACGACCCATGTAACAA 119 Query 36633 GAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 36692 | | ||||| | ||||| | ||||| |||| ||| || || || || |||||||| Sbjct 120 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAT 179 Query 36693 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGAT 36752 || || | || ||| |||||||| |||||||| ||||| | ||| || || || | Sbjct 180 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 239 Query 36753 GGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 36812 || | || || || || || |||||||||||||| |||| | ||| || ||||| ||| Sbjct 240 GGAATAATGGCACCTGAAATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 299 Query 36813 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 36872 ||||||||||| ||||| || ||||| ||||||| || || || | |||| | | | Sbjct 300 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTT 359 Query 36873 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 36932 || || || | | ||||||||||| || |||||||| || | || || ||||| | Sbjct 360 GCGGTCAATAAGGTAGGGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 419 Query 36933 GTACTTGTAACCCAGTCACATAA 36955 || || || | ||||| ||| || Sbjct 420 GTGCTAGTTATCCAGTTACAGAA 442 >seq544 Length=768 Score = 114 bits (126), Expect = 4e-21 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || || ||| | || || ||||| ||||||||||||||||| | | Sbjct 230 AGCAGCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAG 171 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || ||||||| | || | ||||||||||| | || | ||| | |||||| || Sbjct 170 GTTCGCACGGTAATGA-TATCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACCAC 112 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || |||||||||||| | || | ||| || Sbjct 111 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 52 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAA 36193 | ||| || | || |||||||| || |||||||| ||||| Sbjct 51 GAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTGTAA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150450288927554