Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq476 250 8e-62 seq544 118 3e-22 >seq476 Length=815 Score = 250 bits (276), Expect = 8e-62 Identities = 323/440 (73%), Gaps = 7/440 (2%) Strand=Plus/Plus Query 5741 GGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAAT 5799 ||||| | || || || | ||||| | || ||||| || ||||||||||| || ||| Sbjct 7 GGGTAGATCAAGAAAACAGCAGTAG-CAGCTGCAACGGGAGCTGAATATGCAACAGCAAT 65 Query 5800 CCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGAT 5859 ||| |||||||| |||| | | ||||||| ||||| | || |||| |||| || | Sbjct 66 CCAAGGTCGCATACCTAGACGG-AACTAAGCTCCCACTCACGACCCATGTAACAAGCTAC 124 Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 ||||| | |||||| | || | |||| || || || |||||||| | ||||||||| Sbjct 125 ACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATC 184 Query 5920 GA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGT 5977 | ||| || |||||||| || || || ||||| || || || || || | || Sbjct 185 AACGGAT--GCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGA 242 Query 5978 ACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGT 6037 | || ||| ||||| || |||||||||||||| ||||||||||| | || |||||||| Sbjct 243 ATAATGGCACCTGAAATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGA 302 Query 6038 ATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCG 6097 || || || || || ||||| || ||||| | ||| || | |||||| ||| ||||||| Sbjct 303 ATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCG 362 Query 6098 GTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTG 6157 || || | | || |||||||| ||||||||||| || | || || ||||| | ||| Sbjct 363 GTCAATAAGGTAGGGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTG 422 Query 6158 CTAGTAACCCAGTCACAGAA 6177 ||||| | ||||| |||||| Sbjct 423 CTAGTTATCCAGTTACAGAA 442 >seq544 Length=768 Score = 118 bits (130), Expect = 3e-22 Identities = 162/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || || ||| | |||||||| ||||| ||||| ||||||||| |||| Sbjct 230 AGCAGCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAG 171 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||||| | || ||| |||||||| || | | || | ||||| || Sbjct 170 GTTCGCACGGTA-ATGATATCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACCAC 112 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || |||||||||||| || || | || || Sbjct 111 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 52 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAA 5415 | ||| || | || || ||||||| || |||||||| ||||| Sbjct 51 GAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTGTAA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645428945086