Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq7 444 6e-120 seq476 250 3e-61 seq544 118 1e-21 >seq7 Length=7073 Score = 444 bits (492), Expect = 6e-120 Identities = 615/858 (72%), Gaps = 2/858 (0%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || || || |||||||| || ||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCT 9993 || || ||||| || || ||| | || ||| || | || || ||| |||||| | Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AATTTCTT 679 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || || || || || || |||||| || | | | |||||| | | ||||| ||||| Sbjct 678 AACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGG 619 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 |||||| | ||||||||||| || ||| || | || || || ||| ||||||| Sbjct 618 TCCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGT 559 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || |||| || || |||| |||| || || ||| |||| || || || || || | Sbjct 558 TGCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCG 499 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 || || | | |||||||| ||||| ||||| || |||| || |||||||||||||| Sbjct 498 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGT 439 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||||| || |||||||| || |||||| |||||||||||||||| ||||| || Sbjct 438 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 379 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 ||| || || || || || ||| | ||||| | || || ||||||||||||||| | || Sbjct 378 CGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAA 319 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 || || ||||||||||||||||| ||| || |||| | || | |||| || || || Sbjct 318 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCA 259 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 || | || |||||||| || | | | ||||||| || ||||| || ||| || Sbjct 258 TGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 199 Query 10474 TTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 10533 |||| | ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 198 TTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 139 Query 10534 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 10593 ||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 138 CCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 79 Query 10594 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 10653 ||| || | ||| | |||| | || ||||| | | ||||| ||||| || || || Sbjct 78 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACG 19 Query 10654 TGCTTACGATTTTGTATC 10671 || || || ||||| || Sbjct 18 CGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 250 bits (276), Expect = 3e-61 Identities = 299/402 (74%), Gaps = 3/402 (1%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| ||| || ||| |||| || | || |||| Sbjct 400 GGATGGTTTGGTGTTTTAATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATTAT 342 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| ||| ||||||||||||| || || || || || || || ||||| ||| ||||||| Sbjct 341 CGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 282 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | || || |||||||| || || ||||| || |||| | ||| || || || Sbjct 281 TCTACTTTATGGAAACAACATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGG 222 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | ||||| ||||| || |||||||| || || ||||||| ||| | ||||| ||||| Sbjct 221 TTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGG 162 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| | || | ||| | |||||| | ||||| || | ||| ||||||||||| Sbjct 161 TCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 102 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||| ||| || ||| || || ||||| |||||||| ||||||||| || ||||| Sbjct 101 GTGGGAGCTTAGTT-CCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCC 43 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGG 8690 ||||| |||||| ||||||| ||| | |||| || |||| Sbjct 42 CGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGG 1 >seq544 Length=768 Score = 118 bits (130), Expect = 1e-21 Identities = 162/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 9010 TTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTC 9069 || || |||||||| || || |||||||| || || |||||||| || || | || | Sbjct 7 TTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATT 66 Query 9070 TCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAA 9129 || |||||||||||||| ||||| ||||| |||||||| ||| | | || | ||| Sbjct 67 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGATAGTCAA 126 Query 9130 GGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTC 9189 ||||| || | || || ||||| || | | | |||| || || | ||||||||| Sbjct 127 GGACGTGTAATTAATACTTGGGCTGATAT-CATTACCGTGCGAACCTTGATATGGAAGTT 185 Query 9190 ATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 ||||| ||| | || || || | ||| || || ||||| || ||| Sbjct 186 ATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516465144744000