Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq7 461 8e-125 seq476 257 2e-63 seq544 178 1e-39 >seq7 Length=7073 Score = 461 bits (510), Expect = 8e-125 Identities = 622/860 (72%), Gaps = 6/860 (1%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || ||||||||||||||||| |||||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | ||| | ||||||||| | || || || || || Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCT 162295 || || |||||||| || ||| | || ||||||||| | || || ||||| ||||| Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA--TTTCT 680 Query 162296 TA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGG 162354 || |||| |||||||||||||| || | | | | |||||| | |||| ||||||| Sbjct 679 TAACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGG 620 Query 162355 GTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTG 162414 ||||||| | || || || || | || ||||| ||| | || || || |||||||||| Sbjct 619 GTCCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTG 560 Query 162415 TGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 162474 | || |||| || || || | ||| |||||||||||||| || || || ||||| || | Sbjct 559 TTGCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTC 500 Query 162475 GA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTC 162533 || || || | | || ||||| ||||| || || ||||| | ||| |||||||| || Sbjct 499 GATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTT 441 Query 162534 GTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTC 162593 ||| ||| || || || ||||| | || || || |||||||| || || || Sbjct 440 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 381 Query 162594 GGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTA 162653 || || ||||| || || |||||| | ||||| | |||||||| ||||| |||||| | Sbjct 380 GGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTG 321 Query 162654 AATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATT 162713 || || ||||| |||||||| || || ||| | | || | ||| ||||| | |||||| Sbjct 320 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATT 261 Query 162714 CATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAA 162773 ||||| | || || |||||||| | | |||||||| || ||||| || || Sbjct 260 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 201 Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | ||||||||| ||||| ||||| || || |||||||| ||| Sbjct 200 GCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 141 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || ||||| || |||||||| || || |||||||| |||||||||||| | ||| Sbjct 140 TCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 81 Query 162894 GTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTT 162953 || || || | ||| | |||| ||| || | || | | || || ||||| || || Sbjct 80 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTA 21 Query 162954 CGTGCTTACGACTTTGTATC 162973 || || || |||||||| || Sbjct 20 CGCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 257 bits (284), Expect = 2e-63 Identities = 322/438 (74%), Gaps = 3/438 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | || ||||| || ||||| ||||| |||| ||||| || || | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| || || || |||||| ||| |||||| Sbjct 382 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 324 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || ||||||||||| || |||| || || | ||||||||||| Sbjct 323 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 264 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 ||| || || ||||| |||| ||| ||||| ||||| ||| ||||||| ||||| || Sbjct 263 CATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 204 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| ||| | || |||||| | ||||| |||||||||| |||| |||| Sbjct 203 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 144 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||||| | |||| | | ||||||||||||||||||||| ||| || ||| Sbjct 143 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTT-CCG 85 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 ||| || ||||| ||||||||| || ||||| || ||||| || || || || | ||| Sbjct 84 TCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGC 25 Query 161295 AGTGTTCCTGGTCTATCC 161312 || ||| || |||| || Sbjct 24 TGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 178 bits (196), Expect = 1e-39 Identities = 180/233 (77%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 161632 CGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTG 161691 || ||| | ||||||||||| || ||||||||||| || || |||||||||||||| | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 161692 GGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGAT 161751 || | ||||| ||||| |||||||| ||||||||||| |||||||| || | |||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 161752 AGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCA--ACCGTGCTGGTCTTGGCA 161809 ||||| || || || || || ||||| || | ||| ||||||| |||| | Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGA---TATCATTACCGTGCGAACCTTGATA 177 Query 161810 TGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCT 161862 ||||||| ||||| || || |||||||| | ||| ||||| ||||| |||||| Sbjct 178 TGGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547731445421160