Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq476 255 2e-63 seq544 109 2e-19 >seq476 Length=815 Score = 255 bits (282), Expect = 2e-63 Identities = 305/413 (74%), Gaps = 1/413 (0%) Strand=Plus/Plus Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 |||||||| || || || ||||| |||||| |||||| || ||||||||||| | || Sbjct 31 GCAGCTGCAACGGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCTAGACGG-AA 89 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||| ||||| | || ||||||||| || | || | | ||||| | ||||| Sbjct 90 CTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 149 Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584 |||| ||| || || || || |||||||| || || | || ||| |||||||| |||||| Sbjct 150 AGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATTGGG 209 Query 18585 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTT 18644 || ||||| | ||| || || ||| | || | || || ||||| || ||||||||| Sbjct 210 TAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATGTTGTTT 269 Query 18645 CCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCA 18704 ||||| |||| | ||| || ||||| |||||||||||||| || || || ||||||||| Sbjct 270 CCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 329 Query 18705 GCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACC 18764 |||| || || || | |||| | | || |||||| || | | ||||||||| | || Sbjct 330 GCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATTAAAACA 389 Query 18765 CCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 |||||||| || | ||| || ||||| | || || || | ||||| ||| || Sbjct 390 CCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 442 >seq544 Length=768 Score = 109 bits (120), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| || ||| ||||||||||||| || ||||||||||| | ||||||| Sbjct 227 AGCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAGGTT 168 Query 17894 AGCTCTGT--TGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 || | || ||| || |||||||| ||| | || ||||| | | || | | Sbjct 167 CGCACGGTAATGA-TA--TCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACCACG 111 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| ||||| ||||| || || |||||||||||| || || | || || Sbjct 110 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTG 51 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 | ||| || | || |||||||| || | |||||| |||| Sbjct 50 AACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTGTA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151314265319294