Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq7 452 5e-122 seq476 208 1e-48 seq544 141 1e-28 >seq7 Length=7073 Score = 452 bits (500), Expect = 5e-122 Identities = 619/861 (72%), Gaps = 8/861 (1%) Strand=Plus/Plus Query 101866 GATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTC 101925 || ||||||||||| || || ||||| ||||| ||||| | | || | | ||| || Sbjct 1 GAAACAAAGTCATAGGCGCGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATC 60 Query 101926 CACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAAT 101985 || | ||| | || || ||||| | |||||||||||| ||||| | ||||| ||| Sbjct 61 CATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAA 120 Query 101986 GCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCC 102045 |||| ||||| ||||| ||||| || ||||| || || |||||||||||||| |||||| Sbjct 121 GCAACCCCAAAAATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCC 180 Query 102046 TCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTG 102105 |||| || | | || || ||| || ||||| ||||||||||||| | | ||| Sbjct 181 GCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTA 240 Query 102106 TTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACA 102165 || || || || |||| || || || | |||| || | |||| | ||| ||||| Sbjct 241 TTTTCTACGGTAGCACCATGAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACT 300 Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225 ||||||||||| |||||||| | |||||| ||||| || || || | ||||| | |||| Sbjct 301 CCCATCATATGAAATGGGTTCAACGTCCAATTATGAAACCCTTGAAAAAAGAGGATGAAT 360 Query 102226 CTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 102285 | |||||| ||||| || ||||| |||||||||||||||| ||||| || || ||| Sbjct 361 CGAAATATAGCTGCTACGCCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGA 420 Query 102286 TAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTAC 102345 || || || || ||| ||||||||||| || || ||||||| || || ||||| || Sbjct 421 TAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAA 480 Query 102346 GGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCA 102405 || || | | || | | ||| | ||||||||||| ||||||||||| || || | Sbjct 481 GGTCGCAATTGAACAGATCGAGCAAGTTCGAATTGACGTAGCATGAAACCTATTAGTCCG 540 Query 102406 AATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAA 102465 || || || |||| ||| ||||||| ||| || || || | ||| ||| | ||| Sbjct 541 AAAGCGCCATGGAAAGCAACAAAAGTCCATAGACCACCTAATTGACACCAACGAGTAAAA 600 Query 102466 TCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGC 102525 ||||| || |||||||||||||| ||||| | | |||||| | | | | |||||| Sbjct 601 TCTCCCTGTGCTTCAGGACCCCATAGTAGCAATAAAGAATGCGCTAAACTATTAGCAGGA 660 Query 102526 GTTGACACAGCAGCTGTAAGGAAATTAGCA-CCTTC---AAGGTAACTAGACGCAAGCCC 102581 || || || || || || | |||||| ||| ||||| | | ||||| || | || Sbjct 661 GTAGAAACTGCGGCAGTTAAGAAATT-GCAGCCTTCCAAATAGGAACTA---GCCAATCC 716 Query 102582 GTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATA 102641 ||||||||||| ||||| |||| || || || || | ||| ||||| | |||| ||| Sbjct 717 ATGGGTATACCACGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATA 776 Query 102642 AGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAT 102701 ||| ||||| || | ||| || ||||| || ||||| || || || || | | Sbjct 777 GGCACAAGGAAAGAGCAATAGGCCGGACCAGCCTACAAAAACGAAACGGTCCCTCCGTAA 836 Query 102702 CCAGTCATCCAGGATGTCAAA 102722 ||||||||||| || ||||| Sbjct 837 CCAGTCATCCATAATATCAAA 857 >seq476 Length=815 Score = 208 bits (230), Expect = 1e-48 Identities = 301/419 (72%), Gaps = 7/419 (2%) Strand=Plus/Plus Query 103715 CCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACA 103774 |||| ||||||| |||||| || || | ||||| ||||| ||||| || ||||| ||| Sbjct 1 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACGGGAGCTGAATATGCAACA 60 Query 103775 CAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCA 103834 ||||| || ||||| || |||||| | | | ||||||||||| ||||| || | Sbjct 61 GCAATCCAAGGTCGCATACCTAGACGGAACTA-AGCTCCCACTCACGACCCATGTAACAA 119 Query 103835 TAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCAC 103894 | |||| | |||||| | || | |||| |||||||||| || || | ||| Sbjct 120 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAT 179 Query 103895 TCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAG 103954 ||||||| ||||| |||||||| || || || ||||| | ||| || || || || || Sbjct 180 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGC--TGCAGAAG 237 Query 103955 --GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTT 104012 |||| || ||||| || || |||||||| || || | || || |||| || |||| Sbjct 238 TAGGAATAATGGCACCTGAAATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTT 297 Query 104013 CACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATG 104071 ||||||| || || ||||| || ||||| || || | ||| || | || || |||| Sbjct 298 CACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-A 356 Query 104072 GTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTT 104130 ||||| | ||| | || |||||||| | ||||| ||||| |||| || |||||||| Sbjct 357 GTTGCGGTCAATAAGGTAGGGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTT 415 >seq544 Length=768 Score = 141 bits (156), Expect = 1e-28 Identities = 154/203 (76%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || || ||| | ||||| ||||| || ||||| ||||||||| | || Sbjct 230 AGCAGCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAG 171 Query 103231 ACCAGCGCGGT--TGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGG 103288 || |||| ||| | || ||||| || || | ||||| || |||| ||||| Sbjct 170 GTTCGCACGGTAATGATA---TCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACC 114 Query 103289 ATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCG 103348 | ||| |||||||| ||||| || || |||||||| ||||| ||||||| ||| | || Sbjct 113 ACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCA 54 Query 103349 GTGAACCAGATACCCACTACTGG 103371 |||||||||||||| ||||| || Sbjct 53 GTGAACCAGATACCTACTACAGG 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633495378565080