Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq476 203 9e-48 seq544 123 7e-24 >seq476 Length=815 Score = 203 bits (224), Expect = 9e-48 Identities = 291/406 (72%), Gaps = 3/406 (1%) Strand=Plus/Plus Query 22028 GAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCAT 22087 ||| |||||||| ||||| || || ||||| || || |||||| ||||| || | ||| Sbjct 18 GAAAACAGCAGTAGCAGCTGCAACGGGAGCTGAATATGCAACAGCAATCCAAGGTCGCAT 77 Query 22088 CCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAA 22147 ||||| || | ||||| |||||||| || ||||||||| | || |||| | ||| Sbjct 78 ACCTAGACGGAA-CTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAA 136 Query 22148 GTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGC 22207 ||| | || | |||| | ||||| || ||||| | ||||||||||| | || || Sbjct 137 GTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCCGC 196 Query 22208 TTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGA 22267 |||||| |||||||| ||||| | || || || | | |||| | ||| ||||| Sbjct 197 TTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGA 256 Query 22268 TATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTC 22327 || |||||||| ||||| | || || |||| || ||||| || || ||||| || || Sbjct 257 AATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATC 316 Query 22328 AACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACG 22386 || || || || ||| |||||||||||||| || || |||| ||| ||| | | Sbjct 317 TACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA-G 375 Query 22387 GAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 | ||||| | || || |||||||| | ||||||||||| | ||| Sbjct 376 GGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 421 >seq544 Length=768 Score = 123 bits (136), Expect = 7e-24 Identities = 159/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || || ||| | || || || || |||||||| || || | ||||||| Sbjct 226 GCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAGGTTC 167 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||||||| | || | |||||||| || || || || |||| | | | | | || ||| Sbjct 166 GCACGGTAATGA-TATCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACCACGGAT 108 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| || | || | |||| ||| Sbjct 107 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 48 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG 21688 || |||||||| |||||||| || || || ||||| || Sbjct 47 CAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146204004957780