Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq7 313 3e-80 seq476 205 1e-47 seq544 132 6e-26 >seq7 Length=7073 Score = 313 bits (346), Expect = 3e-80 Identities = 596/878 (68%), Gaps = 21/878 (2%) Strand=Plus/Plus Query 123026 GATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTC 123085 || |||||||| || || | ||||| || || ||||| || | || | || || Sbjct 1 GAAACAAAGTCATAGGCGCGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATC 60 Query 123086 CACATACCCATGACAGGAACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAAT 123145 || | ||| | || || || || ||||||| ||| ||||| | | ||| || ||||| Sbjct 61 CATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAA 120 Query 123146 GCGATACCAAATATCTGTGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCT 123205 || | ||||| || || ||||| || | ||| || || | ||| |||||||||||| Sbjct 121 GCAACCCCAAAAATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCC 180 Query 123206 TCCTGTGTAGGATCGAATGCTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGT 123265 | || || || | || || | ||| |||| ||| | || ||| || Sbjct 181 GCTTGAGTTGGGTTAAAAGCACGGAA---TGTAT-TTGCA-----CCATCACCAT----- 226 Query 123266 GATGTGTCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCT 123325 ||||| | || || || | || || ||||||||||| || ||||| || || Sbjct 227 -------CTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATAGCGCATAGCAAAGCA 279 Query 123326 CCACCTAGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAA 123385 | || | || || ||||| |||||||| |||||||| ||||| || || || || Sbjct 280 GCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAC 339 Query 123386 CCTTGTATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAAC 123445 ||||| | || | ||| | ||||| || ||||| || || || || || |||||| Sbjct 340 CCTTGAAAAAAGAGGATGAATCGAAATATAGCTGCTACGCCAAAACTAGGCGCAAAGAAC 399 Query 123446 CAACTGTGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCA 123505 |||| ||||||||||||||| ||||| || | | || || || || |||| Sbjct 400 CAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCA 459 Query 123506 GAGAATGCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTG 123565 |||||||||| ||| || ||||||| | ||| || || | || ||||| | Sbjct 460 GAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGTTCGAATTGACGT 519 Query 123566 AGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCG 123625 |||||||||||||| ||||| || | ||||| || || ||||| |||||||||| || Sbjct 520 AGCATGAAACCTATTAGTCCGAAAGCGCCATGGAAAGCAACAAAAGTCCATAGACCACCT 579 Query 123626 AGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTA 123685 | ||| |||||||| || ||| ||||||||||| ||||| || | || | | | Sbjct 580 AATTGACACCAACGAGTAAAATCTCCCTGTGCTTCAGGACCCCATAGTAGCAATAAAGAA 639 Query 123686 TGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGA 123745 || | | | | |||| || || ||||| || |||||||| || || || | | Sbjct 640 TGCGCTAAACTATTAGCAGGAGTAGAAACTGCGGCAGTTAAGAAATTGCAGCCTTCCAAA 699 Query 123746 TATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAA 123805 || ||| || | ||||| |||||||| || || || ||||| || ||| ||||||| Sbjct 700 TAGGAACTAGCCAATCCATGGGTATACCACGAAGTTACAAAGGTTGTACCTGTGAACCAA 759 Query 123806 CCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACA 123865 || || | | | ||| |||||||| | || || || || ||||| |||| || || Sbjct 760 CCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGGCCGGACCAGCCTACAAAAACG 819 Query 123866 AAACGATCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 ||||| || ||| ||||||||| || | || |||||| Sbjct 820 AAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 857 >seq476 Length=815 Score = 205 bits (226), Expect = 1e-47 Identities = 314/444 (71%), Gaps = 3/444 (1%) Strand=Plus/Plus Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 |||| |||||| | ||||| ||||| ||||| | || || |||||||| |||||| Sbjct 1 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACGGGAGCTGAATATGCAACA 60 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||| ||||| |||| | | | | || ||||||| | |||||||| Sbjct 61 GCAATCCAAGGTCGCATACCTAGACGGAACTA-AGCTCCCACTCACGACCCATGTAACAA 119 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||||| | |||||| | || | | | ||||||||||||||| || |||||| Sbjct 120 GCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCAT 179 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||| | ||| |||||||| |||||||| ||||| | || ||||| || | Sbjct 180 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 239 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || ||||| || || |||||||| ||||| | | ||| || | || ||||| Sbjct 240 GGAATAATGGCACCTGAAATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 299 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || || || ||||| || ||||| || ||||| || || | || || ||| | | Sbjct 300 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGT 358 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 ||| || | |||| || ||||||| |||||||||||| |||| |||| | ||| | Sbjct 359 TGCGGTCAATAAGGTAGGGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 418 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||| ||| | |||||| Sbjct 419 AGTGCTAGTTATCCAGTTACAGAA 442 >seq544 Length=768 Score = 132 bits (146), Expect = 6e-26 Identities = 161/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| || ||| | || ||||| | ||||||||||||||||||| | | ||| Sbjct 226 GCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAGGTTC 167 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | || || |||| |||| || | | ||| | | |||||| || ||| Sbjct 166 GCACGGTAATGAT-ATCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACCACGGAT 108 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| | |||||| ||||| |||| ||||| | || || ||| Sbjct 107 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 48 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTG 124266 || | || ||| ||||| || | |||||||||||||| Sbjct 47 CAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578981746558520