Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq7 437 1e-117 seq476 239 6e-58 seq544 123 3e-23 >seq7 Length=7073 Score = 437 bits (484), Expect = 1e-117 Identities = 615/857 (72%), Gaps = 6/857 (1%) Strand=Plus/Plus Query 23550 ACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAA 23609 ||||| ||||| || || || || ||||| || || | | |||| || | | ||| Sbjct 4 ACAAAGTCATAGGCGCGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCAT 63 Query 23610 AGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCA 23669 | ||| | || || ||||| ||||||||||| || |||||||| |||||| ||| ||| Sbjct 64 AAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCA 123 Query 23670 ACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCC 23729 ||||| || ||||| |||||||| || || || || ||||| ||||| || || ||| | Sbjct 124 ACCCCAAAAATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCT 183 Query 23730 TGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTC 23789 ||||| | | || || || || ||||| || ||||||||| | | ||||| Sbjct 184 TGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTT 243 Query 23790 TCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCC 23849 || || ||| | ||||||||||| | || | || | |||| || ||| ||||||||| Sbjct 244 TCTACGGTAGCACCATGAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACTCCC 303 Query 23850 ATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTG 23909 |||||||| || ||||| | |||||| |||||||| || || | ||||| | ||| | Sbjct 304 ATCATATGAAATGGGTTCAACGTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGA 363 Query 23910 AAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAG 23969 || || || || || || ||||| ||||||||||||||| ||||| || | ||||| Sbjct 364 AATATAGCTGCTACGCCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAA 423 Query 23970 ATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGA 24029 || ||||||||||| || || |||||||| ||| |||| || || || ||||| || || Sbjct 424 ATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGT 483 Query 24030 CGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAA 24088 || | | || ||| || || ||||| || ||||||| ||| |||||||| ||| | || Sbjct 484 CGCAATTGAA-CAGATCGAGCAAGTTCGAATTGACGTAGCATGAAACCTATTAGTCCGAA 542 Query 24089 GGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTC 24148 || || |||| ||||||||| | ||| || || || | ||| ||| || ||| || Sbjct 543 AGCGCCATGGAAAGCAACAAAAGTCCATAGACCACCTAATTGACACCAACGAGTAAAATC 602 Query 24149 CCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGT 24208 || || | ||||||||||| ||||| | | |||||| | | | | |||||| || Sbjct 603 TCCCTGTGCTTCAGGACCCCATAGTAGCAATAAAGAATGCGCTAAACTATTAGCAGGAGT 662 Query 24209 CGAGACAGCTGCCG-TAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGG 24266 || || || || | ||||||| | ||| || || | |||||||||||| | ||||||| Sbjct 663 AGAAACTGCGGCAGTTAAGAAA--TTGCAGCCTTCCAAATAGGAACTAGCCAATCCATGG 720 Query 24267 GTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA 24326 || ||||| || ||||| | ||| || || | |||||| || | || | ||| ||| Sbjct 721 GTATACCACGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAATAGGCA 780 Query 24327 GTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAG 24386 |||| || | || || ||||| || ||||| || || || |||| | |||| Sbjct 781 CAAGGAAAGAGCAATAGGCCGGACCAGCCTACAAAAACGAAACGGTCCCTCCGTAACCAG 840 Query 24387 TCGTCCAAGATGTCAAA 24403 || |||| || ||||| Sbjct 841 TCATCCATAATATCAAA 857 >seq476 Length=815 Score = 239 bits (264), Expect = 6e-58 Identities = 318/438 (73%), Gaps = 3/438 (1%) Strand=Plus/Plus Query 27280 GGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATC 27339 || |||| | ||| || ||| | ||||| || || ||||| |||||||| ||| ||| Sbjct 7 GGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACGGGAGCTGAATATGCAACAGCAATC 66 Query 27340 CATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATG 27399 || || |||||||||| ||| | | || ||||||||||| ||||| ||| | | Sbjct 67 CAAGGTCGCATACCTAGACGGAACTA-AGCTCCCACTCACGACCCATGTAACAAGCTACA 125 Query 27400 CCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCG 27459 || | | |||||| | || | |||| |||||||||| || || ||||| ||||| Sbjct 126 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCA 185 Query 27460 AGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACA 27519 | ||||| |||||||| |||||||| ||||| | ||| || || ||| | || | | Sbjct 186 ACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATA 245 Query 27520 ACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATA 27579 | ||||| ||||| |||||||| ||||| | || || |||| ||| |||||||||||| Sbjct 246 ATGGCACCTGAAATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATA 305 Query 27580 CCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGC 27638 || |||||||| || || || || || ||||| |||| ||| || |||| |||||| | Sbjct 306 CCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-AGTTGCGGT 364 Query 27639 TAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGA 27698 || | || |||||||| | ||||| ||||| |||| || | |||||| | ||| Sbjct 365 CAATAAGGTAGGGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCT 424 Query 27699 TGTCACCCACTCACAGAA 27716 || | ||| | |||||| Sbjct 425 AGTTATCCAGTTACAGAA 442 >seq544 Length=768 Score = 123 bits (136), Expect = 3e-23 Identities = 168/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | ||||| |||| || || | ||| || || || || | |||| Sbjct 230 AGCAGCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAG 171 Query 26790 ACCAGCACGGT--TGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATC 26847 ||||||| ||| | || |||||||| || | ||||| || || ||||| | Sbjct 170 GTTCGCACGGTAATGATA---TCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACC 114 Query 26848 ACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCG 26907 || || || ||||| |||||||| || || ||||||||||| ||| | ||| | || Sbjct 113 ACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCA 54 Query 26908 GTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACG 26960 ||||||||||| || || || ||||| || || ||||||||||| || ||||| Sbjct 53 GTGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTGTAACGAACG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665475258717320