Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq476 224 3e-54 seq544 136 1e-27 >seq476 Length=815 Score = 224 bits (248), Expect = 3e-54 Identities = 326/454 (72%), Gaps = 5/454 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||||||||| |||| |||||| Sbjct 451 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 392 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| | ||||| |||| || | | | || || | ||| |||||| |||| |||| Sbjct 391 GGTGTTTTAATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCA 334 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 333 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 274 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| |||||||| || || |||||| | | |||| | || || || | || | Sbjct 273 ATGGAAACAACATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACT 214 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| || |||| |||||| | |||||||| || |||||| Sbjct 213 TTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATG 154 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || | || | |||||| | | ||| | | |||| |||| || || ||||| | Sbjct 153 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGC 94 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || || ||| || || ||| | || ||||| |||||| || || || || || || | Sbjct 93 -TTAGTTCCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAG 35 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGG 42731 | || ||||| || ||| | |||| ||| |||| Sbjct 34 CTGCTACTGCTGTTTTCTTGATCTACCCAATTGG 1 >seq544 Length=768 Score = 136 bits (150), Expect = 1e-27 Identities = 167/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 43045 CGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTT 43104 || || || |||||||| || || |||||||| || || || || ||||||||| || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 43105 GGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGAT 43164 || | || |||||||| || ||| | |||||||| || || |||||||| | |||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 43165 AATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTT 43224 | ||| | ||| || ||||||||||||||| | | ||||| ||||||| | Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATATCAT-TACCGTGCGAACCTTGATATG 179 Query 43225 GAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || || ||||| || || ||||| |||| ||| || || || || || Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143528878055948