Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq476 208 2e-49 seq544 116 1e-21 >seq476 Length=815 Score = 208 bits (230), Expect = 2e-49 Identities = 308/430 (72%), Gaps = 5/430 (1%) Strand=Plus/Plus Query 41088 AAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTC 41147 ||||| ||||| ||| |||| | ||||||| ||||| ||| ||||| |||| | Sbjct 16 AAGAAAACAGCAGTAGCAGCTGCAACGGGAGCTGAATATGCAACAGCAATCCAAGGTCGC 75 Query 41148 ATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAA 41207 |||||||| | | | || | ||||||| | ||| ||| ||||| || | ||| Sbjct 76 ATACCTAGACGGAACTAA-GCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAG 134 Query 41208 AAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCC 41266 ||||| | ||||| |||| ||| || || || ||||||| ||| || || | | |||| Sbjct 135 AAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCC 194 Query 41267 GGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCC 41326 | ||||||| |||||||| || || | || || || ||| | |||| | || || Sbjct 195 G-CTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACC 253 Query 41327 AGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTAT 41386 || ||||| ||||| || || | || || || ||||| || ||||| || ||||| || Sbjct 254 TGAAATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAAT 313 Query 41387 ATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATG 41445 |||||| || || || || || |||||||| || || ||| | || || || | ||| | Sbjct 314 ATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAGG 372 Query 41446 CTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCC 41505 || ||||||| ||||||||||| || | ||| || ||||| || |||||||| | || Sbjct 373 TAGGGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCC 432 Query 41506 AGTTACAAAA 41515 ||||||| || Sbjct 433 AGTTACAGAA 442 >seq544 Length=768 Score = 116 bits (128), Expect = 1e-21 Identities = 165/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||||||| | ||||| ||||| || ||||| ||||||||| | || Sbjct 230 AGCAGCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAG 171 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 || | || | || ||||||||||||| ||| || || | | || || || Sbjct 170 GTTCGCACGGTAATGAT-ATCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACCAC 112 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| ||||||||||| ||||| | | || Sbjct 111 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 52 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACG 40759 | ||| || || | || || |||| | || |||||||||| || ||| Sbjct 51 GAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTGTAACGAACG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698473421734