Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq7 461 9e-125 seq476 288 1e-72 seq544 163 3e-35 seq2 91.5 2e-13 >seq7 Length=7073 Score = 461 bits (510), Expect = 9e-125 Identities = 616/850 (72%), Gaps = 10/850 (1%) Strand=Plus/Plus Query 66747 GATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTC 66806 || ||||||||||| || || ||||| ||||| ||||| | | || | | ||| || Sbjct 1 GAAACAAAGTCATAGGCGCGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATC 60 Query 66807 CAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAAC 66866 || | ||| | || || ||||| |||||||||||||| ||||| | |||||| ||| Sbjct 61 CATAAACCGGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAA 120 Query 66867 GCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCC 66926 |||| ||||| || || ||||| |||||||| || || |||||||| |||||||||||| Sbjct 121 GCAACCCCAAAAATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCC 180 Query 66927 TCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTA 66986 ||||||| | || || || ||| || ||||| |||||||||||| | | |||| Sbjct 181 GCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTA 240 Query 66987 TTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACA 67046 || ||||| ||| |||||||||| || | ||||| ||| | |||| | ||| || || Sbjct 241 TTTTCTACGGTAGCACCATGAATAGCGCATAGCAAAGCAGCGCCCAATACACCGGCAACT 300 Query 67047 CCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAAT 67106 |||||||||||||| |||||||| ||||| ||||| || ||||| | ||||| | |||| Sbjct 301 CCCATCATATGAAATGGGTTCAACGTCCAATTATGAAACCCTTGAAAAAAGAGGATGAAT 360 Query 67107 CGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGG 67166 ||||| || |||| || || ||| || || || ||||||| || ||||| || || Sbjct 361 CGAAATATAGCTGCTACGCCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGA 420 Query 67167 TAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAG 67226 || || || || ||| |||||||||||| || ||| ||||||| || || ||||| || Sbjct 421 TAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAA 480 Query 67227 GGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGC 67285 || || | | || ||| || || ||||| || || || ||||||||||| ||||| | Sbjct 481 GGTCGCA-ATTGAACAGATCGAGCAAGTTCGAATTGACGTAGCATGAAACCTATTAGTCC 539 Query 67286 GAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAA 67345 |||||| || |||| || |||||| |||| || || || | ||| ||| || || Sbjct 540 GAAAGCGCCATGGAAAGCAACAAAAGTCCATAGACCACCTAATTGACACCAACGAGTAAA 599 Query 67346 ATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGG 67405 ||| ||||| | ||||||||||| ||||| | | |||||| | | | || |||||| Sbjct 600 ATCTCCCTGTGCTTCAGGACCCCATAGTAGCAATAAAGAATGCGCTAAACTATTAGCAGG 659 Query 67406 CGTTGACACAGCCGCTGTGAGAAAATTAGCA-CCCTCAAGAT---AACTAGACGCGAGTC 67461 || || || || || || | ||||| ||| || || | || ||||| || | || Sbjct 660 AGTAGAAACTGCGGCAGTTAAGAAATT-GCAGCCTTCCAAATAGGAACTA---GCCAATC 715 Query 67462 CGTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATAT 67521 | || || ||||| || ||||| || ||||| || | ||| || || | || | || Sbjct 716 CATGGGTATACCACGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAAGCGAAAT 775 Query 67522 AAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAA 67581 | ||| ||||| || | ||| || ||||| || ||||| || || || || | | Sbjct 776 AGGCACAAGGAAAGAGCAATAGGCCGGACCAGCCTACAAAAACGAAACGGTCCCTCCGTA 835 Query 67582 GCCAGTCATC 67591 ||||||||| Sbjct 836 ACCAGTCATC 845 >seq476 Length=815 Score = 288 bits (318), Expect = 1e-72 Identities = 331/439 (75%), Gaps = 5/439 (1%) Strand=Plus/Plus Query 68389 GGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATC 68448 || |||| || ||| || || | || |||||||| || || || ||||||||| ||| Sbjct 7 GGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACGGGAGCTGAATATGCAACAGCAATC 66 Query 68449 CAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATA 68508 ||||| |||||||| ||||| | || | ||||| ||||| |||||||| | | | Sbjct 67 CAAGGTCGCATACCTAGACGGAACTAA-GCTCCCACTCACGACCCATGTAACAAGCTACA 125 Query 68509 CCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCA 68568 |||| | |||||| | | | |||| |||||||||||||||| ||||| |||||| Sbjct 126 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCA 185 Query 68569 AGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACA 68628 | || ||| |||||||| || || |||||||| | ||| || || ||| |||||| | Sbjct 186 ACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATA 245 Query 68629 ACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATA 68688 | ||||| ||||| |||||||| ||||| || || || |||| |||||||||||||||| Sbjct 246 ATGGCACCTGAAATAATGTTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATA 305 Query 68689 CCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTG- 68746 ||||| || || || || |||||||| |||||||||| || || ||||| ||||| | Sbjct 306 CCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-AGTTGCGGT 364 Query 68747 CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGG 68806 ||| || ||||||||||| | || || ||||| |||| |||||| ||||| || ||| Sbjct 365 CAATAAG-GTAGGGATCATTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGC 423 Query 68807 AAGTCACCCATTCGCAGAA 68825 ||| | ||| | ||||| Sbjct 424 TAGTTATCCAGTTACAGAA 442 >seq544 Length=768 Score = 163 bits (180), Expect = 3e-35 Identities = 177/233 (76%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| ||||| ||| | || || ||||| |||||||||||||||||| | | Sbjct 230 AGCAGCTAGGTCTAGAGGAAAGCTATGAGCATTACGTTCATGCATAACTTCCATATCAAG 171 Query 67899 ACCAGCGCGGT--TGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGG 67956 || |||| ||| | || ||||| ||| | || || |||||||| Sbjct 170 GTTCGCACGGTAATGATA---TCAGCCCAAGTATTAATTACACGTCCTTGACTATCAACC 114 Query 67957 ATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCA 68016 | || |||||||| ||||||||||| |||||||| ||||| ||||||| ||| | ||| Sbjct 113 ACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCA 54 Query 68017 GTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACG 68069 |||||||||||||| || |||||||| || || ||||||||||| | |||||| Sbjct 53 GTGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAGTGTAACGAACG 1 >seq2 Length=25627 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| |||||||||||||||| ||||||| ||| || Sbjct 1681 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGC 1624 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 1623 TCTACCACTGAGCTACTGAGGA 1602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572037946285320