Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq7 520 1e-142 seq476 250 3e-61 seq544 174 2e-38 >seq7 Length=7073 Score = 520 bits (576), Expect = 1e-142 Identities = 635/860 (74%), Gaps = 6/860 (1%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||||||||||||||| || ||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCT 152537 | || |||||||| || || ||||| ||||||||| |||| ||| |||| ||||| Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA--TTTCT 680 Query 152538 TA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 152596 || |||| |||||||||||||| || || | | | |||||| | |||| || |||| Sbjct 679 TAACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGG 620 Query 152597 GTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTG 152656 ||||||| || || || ||||| | ||| ||| | || || || ||| |||||| Sbjct 619 GTCCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTG 560 Query 152657 TGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 152716 | || |||| || ||||||| ||||| ||||||||||| || || || ||||| || | Sbjct 559 TTGCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTC 500 Query 152717 G-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT 152775 | ||| || | | || || || ||||| || || ||||||| ||| || ||||||||| Sbjct 499 GATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTT 441 Query 152776 GTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTC 152835 ||| || || || || || || || ||||| || ||||||| || || || ||| Sbjct 440 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 381 Query 152836 GGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTG 152895 || || ||||| || || |||||| | ||||| ||||||| || || || ||||| ||| Sbjct 380 GGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTG 321 Query 152896 AATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATT 152955 || || |||||||||||||| ||||| ||| | ||||| | || ||||| | || ||| Sbjct 320 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATT 261 Query 152956 CATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAA 153015 ||||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| Sbjct 260 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 201 Query 153016 GCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGG 153075 ||||| || ||||||| ||||| || ||||| ||||| || |||||||| || ||| Sbjct 200 GCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 141 Query 153076 TCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTT 153135 ||||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||| Sbjct 140 TCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 81 Query 153136 GTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTT 153195 ||||| || | ||| | |||| | || ||||| | | ||||| ||||| || || Sbjct 80 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTA 21 Query 153196 CGTGCTTACGATTTTGTATC 153215 || || || || ||||| || Sbjct 20 CGCGCCTATGACTTTGTTTC 1 >seq476 Length=815 Score = 250 bits (276), Expect = 3e-61 Identities = 321/439 (73%), Gaps = 3/439 (1%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | || ||| | |||||||| || | || ||||| ||||| | Sbjct 443 CTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 384 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 ||||| || || | ||| | ||||| | || || | || ||||| |||||||| Sbjct 383 AATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCC 324 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || || || ||||| || |||||||| ||| |||| ||||| | || || ||||| Sbjct 323 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 264 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 ||| || || ||||| || ||||| ||||| ||||| ||| ||||||| || || || Sbjct 263 CATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 204 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||| || || | ||||||||| | ||||| |||||||||| |||| |||| Sbjct 203 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 144 Query 151138 CTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCG 151197 | |||||| | ||||| | | ||||||||||||||||||||| || | | ||| Sbjct 143 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCG 85 Query 151198 CTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 | |||||||| || ||||| ||| |||||||| || ||||| ||||| ||||| | || Sbjct 84 TCTAGGTATGCGACCTTGGAT-TGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTG 26 Query 151257 CAGTGTTCCTCGTCTATCC 151275 | || ||| | |||| || Sbjct 25 CTGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 174 bits (192), Expect = 2e-38 Identities = 178/231 (77%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 151595 CGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTT 151654 |||||| | ||||||||||| || || |||||||| || ||||||||||||||||| | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 151655 GGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGAT 151714 ||| | ||||| ||||| |||||||| || |||||||| |||||||| ||| | | ||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 151715 GGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATG 151774 |||| || || | || || ||||| || || ||||||| || | |||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGA-TATCATTACCGTGCGAACCTTGATATG 179 Query 151775 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 151825 ||||||||||| || ||||||||||| | ||| ||||| ||||| |||||| Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549606591485720