Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq7 443 2e-119 seq476 197 2e-45 seq544 131 2e-25 >seq7 Length=7073 Score = 443 bits (490), Expect = 2e-119 Identities = 610/847 (72%), Gaps = 6/847 (1%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || || || ||||| || ||||| || || | || Sbjct 847 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCT 788 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 787 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGT 728 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 179126 |||| |||||||| | |||||||||||| | ||||| ||| | ||||||| | || || Sbjct 727 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGC 670 Query 179127 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179186 || || || |||||| || | | | |||||| | | ||||| ||||||||||| | Sbjct 669 AGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGC 610 Query 179187 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 ||||| |||| || ||||| ||| | || || ||||||| ||| || ||| |||| Sbjct 609 ACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCA 550 Query 179247 CGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCG 179305 || || |||| ||||| || |||||||| ||||| || ||||| || || ||| || Sbjct 549 TGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCA 490 Query 179306 GTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTAT 179365 | | || ||||| ||||| || || || ||| ||| ||||| || || ||| ||||| Sbjct 489 AT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTAT 431 Query 179366 TTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGG 179425 | || || || ||||| || || || |||||||||||||||| ||||| || || | Sbjct 430 TCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAG 371 Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485 | || ||| ||||| | || || || ||||| || || || ||||| | ||||| |||| Sbjct 370 CTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTC 311 Query 179486 ACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAA 179545 | |||||||||||||| ||| | |||| | |||| |||| | ||||||||||| | | Sbjct 310 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTA 251 Query 179546 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACT 179605 | ||||| ||||| || | ||||||||| || ||||| ||||| || || || Sbjct 250 CCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 191 Query 179606 CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCT 179665 | || |||| ||| || || ||||| ||||| || || ||||| |||||||| || || | Sbjct 190 CAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTT 131 Query 179666 TCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCA 179725 | |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || | Sbjct 130 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 71 Query 179726 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATG 179785 ||| | ||| | | || |||| | | || || ||||| || || || || |||| Sbjct 70 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATG 11 Query 179786 ATTTTGT 179792 | ||||| Sbjct 10 ACTTTGT 4 >seq476 Length=815 Score = 197 bits (218), Expect = 2e-45 Identities = 311/439 (71%), Gaps = 5/439 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| | ||| ||||| || | ||||| || || | || ||||| || || | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || |||||||| | |||||||| Sbjct 382 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 324 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || |||||||| || |||| || || | ||||| ||||| Sbjct 323 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 264 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 ||| || || ||||| || | || |||| || || ||| | ||||| || || || Sbjct 263 CATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 204 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 203 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 144 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | || ||||| ||||||||||| ||| | ||| Sbjct 143 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTT-CCG 85 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 |||||||||||| || ||||| ||||||||| || || || |||||||| || | || Sbjct 84 TCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGC 25 Query 177977 AGTCTTTCTAG-TCTATCC 177994 || ||||| | |||| || Sbjct 24 TGT-TTTCTTGATCTACCC 7 >seq544 Length=768 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 178314 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTT 178373 ||||| | ||||||||||| || || ||||||||||| || ||||||||||| || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 178374 GGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGAC 178433 ||| | ||| ||||| || ||||| ||||| ||||| |||||||| ||| | | || Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 178434 GGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATG 178493 | ||||||||||| | || || ||||| || | | ||||||| || | ||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATAT-CATTACCGTGCGAACCTTGATATG 179 Query 178494 GAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAGC 178544 ||||| ||||| ||| | ||| || |||| ||| || || || || || || Sbjct 180 GAAGTTATGCATGAACGTAAT-GCTCATAGCTTTCCTCTAGACCTAGCTGC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605649779497160