Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq476 206 8e-49 seq544 140 1e-28 >seq476 Length=815 Score = 206 bits (228), Expect = 8e-49 Identities = 316/442 (71%), Gaps = 9/442 (2%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| || | ||||||||||| |||| |||||||| | ||||| Sbjct 437 TAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGAT 378 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || ||||| || |||||||| ||||| |||| Sbjct 377 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 319 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || ||||||||||||||||| | Sbjct 318 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTA 259 Query 19689 TATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | ||||| |||||||| || Sbjct 258 TTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATG 201 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 200 GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 141 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||||||||| || |||||||| ||||| | || || Sbjct 140 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAG-TTCCGTCT 82 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 ||| ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 81 AGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGT 22 Query 19927 CTTTCTCG-TCTACCCGTTTGG 19947 ||||| | ||||||| |||| Sbjct 21 -TTTCTTGATCTACCCAATTGG 1 >seq544 Length=768 Score = 140 bits (154), Expect = 1e-28 Identities = 168/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 20261 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 20320 ||||| ||||||||||||| || || ||||| || ||||| || |||||| |||| || Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 20321 GGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGAC 20380 || || || ||||| || || || || |||||||| || ||||| ||| | | || Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 20381 AACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTT 20440 | | || ||||| ||| ||||||||||||| | || | ||||| || || | | Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATA-TCATTACCGTGCGAACCTTGATATG 179 Query 20441 GAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || || ||||||||||| |||||||||| ||| || || ||||| || Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148824733346058