Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq476 215 2e-51 seq544 138 3e-28 >seq476 Length=815 Score = 215 bits (238), Expect = 2e-51 Identities = 313/436 (72%), Gaps = 7/436 (2%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | ||| || | ||||||||||| |||| |||||||| | ||||| Sbjct 437 TAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGAT 378 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || ||||| || |||||||| || || |||| Sbjct 377 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 319 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| ||| || |||||||||||||| | Sbjct 318 TAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTA 259 Query 28817 TATCGGGAGCCGTCGTACCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | || | | ||| || || || | ||||| |||||||| || Sbjct 258 TTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATG 201 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 200 GGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 141 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 |||||| | |||| || | ||||||||| || |||||||| ||||| | || || Sbjct 140 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAG-TTCCGTCT 82 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 ||| ||| | || |||||| ||| ||||| ||||||||||| ||||| || |||| || Sbjct 81 AGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGT 22 Query 29055 TTTCCTCGTCTACCCA 29070 |||| | |||||||| Sbjct 21 TTTCTTGATCTACCCA 6 >seq544 Length=768 Score = 138 bits (152), Expect = 3e-28 Identities = 168/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 29389 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 29448 ||||| ||||||||||||| || || ||||| || ||||| || |||||| |||| || Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 29449 GGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGAC 29508 || || || ||||| || || || || ||||| || || ||||| || | | || Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 29509 AACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTT 29568 | | || ||||| |||||||||||||||||| || | || || ||||| | | Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGAT-ATCATTACCGTGCGAACCTTGATATG 179 Query 29569 GAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||||| |||||||| ||||||||||||| ||| || || || || ||| Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146661592454146