Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq476 246 9e-61 seq544 129 2e-25 >seq476 Length=815 Score = 246 bits (272), Expect = 9e-61 Identities = 328/447 (73%), Gaps = 9/447 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| |||| || || || ||||||||||| || || |||||||| | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || ||||| |||||||||||||| | Sbjct 382 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 325 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||||||||||| Sbjct 324 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 265 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCC 18959 |||| || || || ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 264 ACATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 207 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||||||| | ||||| || || || | |||| | Sbjct 206 AATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAAT 147 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||||||||| || |||||||| ||||| | Sbjct 146 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAG-TT 88 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || ||||| ||||| ||||||||| |||||| || |||||||| ||||| || || | Sbjct 87 CCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTAC 28 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGG 19166 ||| || ||| | |||| ||| |||| Sbjct 27 TGCTGTTTTCTTGATCTACCCAATTGG 1 >seq544 Length=768 Score = 129 bits (142), Expect = 2e-25 Identities = 162/221 (73%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 19480 CGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTT 19539 ||||| |||| ||||| | || ||||||||||| || || || ||||| | || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 19540 GGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGAC 19599 || | ||||| ||||| |||||| | ||||| || || || ||||| ||| | |||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 19600 AACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTT 19659 | | || ||||| ||| ||||||||||||| | || | ||||| ||||| | | Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATA-TCATTACCGTGCGAACCTTGATATG 179 Query 19660 GAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || || ||||| |||||||||||||||| ||| || || || Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGA 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141144943197258