Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq7 378 1e-99 seq476 253 3e-62 seq544 136 6e-27 >seq7 Length=7073 Score = 378 bits (418), Expect = 1e-99 Identities = 597/853 (70%), Gaps = 2/853 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | |||||||| || | Sbjct 855 TGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGCCT 796 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | || | || || ||| | || || ||||| ||||| Sbjct 795 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGT 736 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || ||||| |||||||| | ||| ||||||| | || || ||| || || | | Sbjct 735 AACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AATTTCTTAA 677 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | || || || || ||||||||| || | | | |||||| | | ||||| ||||||| Sbjct 676 CTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGTC 617 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 ||||| | ||||| || || || ||| ||| | || || || ||| | ||||||| Sbjct 616 CTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTTG 557 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 || |||| || || |||| || || || |||||||| ||||| || ||||| || || Sbjct 556 CTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGAT 497 Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271 || | || || || || || || |||||| || ||| || ||||| ||||| Sbjct 496 CTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTT 437 Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331 ||| || || | || ||||||||||| ||| ||||||||||| || ||||| | Sbjct 436 CTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCG 377 Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACC 176391 | ||||| || ||| ||||| | | ||| |||| || || || || ||||| |||||| Sbjct 376 TAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAACC 317 Query 176392 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATG 176451 | || ||||||||||||||||| ||| || | || | || | |||| || || |||| Sbjct 316 CATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATG 257 Query 176452 GCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGT 176511 | | ||| || |||||||| ||| ||||||||| || || || ||| ||| | Sbjct 256 GTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTT 197 Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571 | | | || || | |||||| || ||||| ||||| || || |||||||| ||||| | Sbjct 196 TTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCC 137 Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631 |||| || |||||||| ||| ||||| |||||| | || ||||||||||| ||||| | Sbjct 136 AAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 77 Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTG 176691 | || | ||| | ||| | | |||| | | || || ||||| || || || | Sbjct 76 CAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCG 17 Query 176692 CTTATGATTTTGT 176704 | ||||| ||||| Sbjct 16 CCTATGACTTTGT 4 >seq476 Length=815 Score = 253 bits (280), Expect = 3e-62 Identities = 305/411 (74%), Gaps = 3/411 (1%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || ||||| |||||| ||||||| ||||| || || |||||||| Sbjct 415 AACCGTCTTTACATTGGATGGTTTGGTGTTTTAATGATCCCTACCTTATTGACCGCAACT 356 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||| ||| | | |||||| ||||| || || || || || ||||| Sbjct 355 -TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 297 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || || | |||||||||||||| || || ||||| || |||||| Sbjct 296 ACCTGTTTCTGGATCTCTACTTTATGGAAACAACATTATTTCAGGTGCCATTATTCCTAC 237 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || ||| | ||||| |||||||| |||||||| || | | || ||||| Sbjct 236 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 177 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| |||||||||| ||||| |||| | |||||| | ||||| | Sbjct 176 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 117 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 || ||||| ||||||||||| || | | ||| |||||||| |||||||||| ||| Sbjct 116 TTACATGGGTCGTGAGTGGGAGCT-TAGTTCCGTCTAGGTATGCGACCTTGGATTGCTGT 58 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCC 174904 ||||| || || || |||||||| ||| | || || ||| | |||| || Sbjct 57 TGCATATTCAGCTCCCGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 136 bits (150), Expect = 6e-27 Identities = 158/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 175233 CACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCC 175292 ||||||||| |||| || ||||| || || |||||||||||||| || | ||| || | Sbjct 10 CACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGC 69 Query 175293 ACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGT 175352 || ||||| |||||||| ||||||||||| |||||||| || || | || | ||||| Sbjct 70 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGATAGTCAAGGA 129 Query 175353 AGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATG 175412 | ||| | || || ||||| ||| || | || | || |||| |||||||| ||| Sbjct 130 CGTGTAATTAATACTTGGGCTGAT-ATCATTACCGTGCGAACCTTGATATGGAAGTTATG 188 Query 175413 CATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||||| | ||||| || | ||| || ||||| Sbjct 189 CATGAACGTAATGCTCATAGCTTTCCTCTAGA 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729908605399880