Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq7 392 4e-104 seq476 215 6e-51 seq544 132 6e-26 >seq7 Length=7073 Score = 392 bits (434), Expect = 4e-104 Identities = 599/847 (71%), Gaps = 6/847 (1%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| || ||||| || || | || Sbjct 847 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCT 788 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 787 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGT 728 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGC 179410 |||| ||||| || | |||||||||||| | || || ||| | ||||||| | || || Sbjct 727 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGC 670 Query 179411 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179470 || || || |||||| || | | | |||||| | | ||||| ||||||||||| | Sbjct 669 AGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGC 610 Query 179471 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 ||||| |||| || ||||| ||| | || || || |||| ||| || ||| |||| Sbjct 609 ACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCA 550 Query 179531 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTG 179589 || || |||| || || ||||||||||| | ||||| ||||||||||| ||| | Sbjct 549 TGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCA 490 Query 179590 GTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTT 179649 | | ||||||| ||||| || || || |||| ||| |||||||| || || ||| | Sbjct 489 ATTGC-GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTAT 431 Query 179650 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 179709 |||| || ||||| | || ||||| |||||| || ||||| ||||| || || | Sbjct 430 TCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAG 371 Query 179710 CGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCC 179769 | || || | ||| | || || |||| || || || || |||||| | ||||| || | Sbjct 370 CTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTC 311 Query 179770 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTA 179829 |||||||||||||||| ||| || | || | || |||| | ||||| ||||| | || Sbjct 310 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTA 251 Query 179830 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATT 179889 | ||||| ||||| || | ||||||||| || |||||||| || || ||| | Sbjct 250 CCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 191 Query 179890 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 179949 | || || | ||||| |||||||| |||||||| || |||||||| ||||| || || | Sbjct 190 CAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTT 131 Query 179950 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180009 | || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 130 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 71 Query 180010 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 180069 ||| |||||| || |||| | | ||||| ||||| ||||| || || || | Sbjct 70 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATG 11 Query 180070 ATTTCGT 180076 | || || Sbjct 10 ACTTTGT 4 >seq476 Length=815 Score = 215 bits (238), Expect = 6e-51 Identities = 313/438 (71%), Gaps = 3/438 (1%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| | ||| ||||| || | ||||| || || | || ||||| || || | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| ||||| || || |||||||| | |||||||| Sbjct 382 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 324 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || |||||||| || |||| || || | ||||| ||||| Sbjct 323 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 264 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||| || || ||||| || |||| |||| || || ||| | ||||| || || || Sbjct 263 CATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 204 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | || Sbjct 203 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 144 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| | ||||| | | |||||||| ||||||||||| | || | ||| Sbjct 143 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGC-TTAGTTCCG 85 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | |||||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 84 TCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGC 25 Query 178268 AGTATTCCTGGTCTATCC 178285 || ||| || |||| || Sbjct 24 TGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 132 bits (146), Expect = 6e-26 Identities = 168/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 178605 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTG 178664 ||||| | ||||||||||| || || ||||||||||| || ||||||||||| || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 178665 GGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGAC 178724 || | ||||| ||||| || ||||| ||||| ||||| |||||||| ||| | | || Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 178725 GGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATG 178784 | ||||||||||| | || || ||||| || | | ||||||| || | ||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATAT-CATTACCGTGCGAACCTTGATATG 179 Query 178785 GAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 ||||| ||||| || || || || || | ||| || || || || || || Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605992169648880