Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq7 419 3e-112 seq544 161 1e-34 >seq7 Length=7073 Score = 419 bits (464), Expect = 3e-112 Identities = 578/802 (72%), Gaps = 6/802 (1%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| |||||||||||||| |||||||| || Sbjct 857 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGC 798 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 797 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 738 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 160077 | ||| ||||||||||||||| | |||||||||||| | || || ||||| ||||| Sbjct 737 GTAACTTCGTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA--TTTCT 680 Query 160078 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 160136 || | || ||||| ||||| ||| | | | | |||||| | | || || |||| Sbjct 679 TAACTGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGG 620 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 ||||||| || || || ||||| | ||| ||| | || || || |||| ||||| Sbjct 619 GTCCTGAAGCACAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTG 560 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | || ||||||| || |||| ||||| || |||||||| ||||| || ||||| || | Sbjct 559 TTGCTTTCCATGGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTC 500 Query 160257 G-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTT 160315 | ||| || | | || ||||| ||||| || || ||||||| ||| |||||||| ||| Sbjct 499 GATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTT 441 Query 160316 GTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 160375 || |||||||| || || ||| | |||||||| ||||||| || || || ||| Sbjct 440 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 381 Query 160376 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTT 160435 || || ||||| || ||| ||||| | | || ||||||| ||||| || |||||| | Sbjct 380 GGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTG 321 Query 160436 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATC 160495 ||||| || ||||||||||||||||| ||| || | || | || |||| | || || Sbjct 320 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATT 261 Query 160496 CATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAG 160555 ||||| | ||| ||||| || || | | ||||||||| || |||||||| || Sbjct 260 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 201 Query 160556 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160615 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 200 GCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 141 Query 160616 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160675 || || || || || |||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 140 TCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 81 Query 160676 GTGCCTGTTATGGGTCTTTGGA 160697 || || || | ||| | |||| Sbjct 80 GTACCAGTAACCGGTTTATGGA 59 >seq544 Length=768 Score = 161 bits (178), Expect = 1e-34 Identities = 175/231 (76%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 159135 CGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTT 159194 ||||| || ||||||||||| || || |||||||| || || ||||||||||| || | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 159195 GGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 159254 || | || ||||| |||||||| || |||||||| |||||||| ||| | ||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 159255 GGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATG 159314 |||| || ||||| | || || ||||| ||| | | ||||||| || | |||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATAT-CATTACCGTGCGAACCTTGATATG 179 Query 159315 GAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 159365 |||||||||||||| ||||| || || | ||| || || ||||| |||||| Sbjct 180 GAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552457709478080