Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq7 425 7e-114 seq476 212 8e-50 seq544 165 1e-35 >seq7 Length=7073 Score = 425 bits (470), Expect = 7e-114 Identities = 592/826 (72%), Gaps = 4/826 (0%) Strand=Plus/Minus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| |||||||| || ||| | || |||| ||| ||| | || Sbjct 827 GACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 768 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| ||||| || | ||| Sbjct 767 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGTGGTATACCCATGGATTGGCT 708 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGACG 180228 ||||||| | ||||| ||| | ||||||| | || || || || || |||||| | Sbjct 707 AGTTCCTATTTGGAAGGCTGCAA--TTTCTTAACTGCCGCAGTTTCTACTCCTGCTAATA 650 Query 180229 CTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGT 180288 | | | |||||| | | ||||| ||||||||||| | ||||| |||| || | Sbjct 649 GTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGCACAGGGAGATTTTACTCGTT 590 Query 180289 GGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTG 180348 |||| ||| | || || || |||| ||| || ||| |||| || || |||| ||||| | Sbjct 589 GGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCATGGCGCTTTCGGACTAATAG 530 Query 180349 GATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTA 180408 | || |||||||| || || ||||| || || | || | || ||||| ||||| | Sbjct 529 GTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAA 470 Query 180409 TTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTC 180468 | |||||||||| ||| || ||||| ||||| ||||| || || || ||||| |||| Sbjct 469 TCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTC 410 Query 180469 AGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCT 180528 |||| ||||||||||||| || |||||| |||||||| || ||| ||||| | |||| Sbjct 409 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCT 350 Query 180529 TTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 180588 || |||| || || || || ||||| | ||||| || ||||||||||||||||| ||| Sbjct 349 TTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTG 290 Query 180589 TACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATG 180648 || | || | || ||||||| || || ||||| | || || || || || | | || Sbjct 289 TATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTG 230 Query 180649 AAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTT 180708 ||||||| || ||||| || || || ||| | |||| |||| ||| ||||||| Sbjct 229 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCGGAAGAAACTT 170 Query 180709 ACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 180768 | || |||||||| || |||||||| ||||| || || || || |||| ||||| || | Sbjct 169 ATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATA 110 Query 180769 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180828 | || ||| | ||||| || ||||| ||||| || || | ||| |||||| || Sbjct 109 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 50 Query 180829 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGT 180874 |||| | | ||||| ||||| ||||| || || || || || || Sbjct 49 TTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTTGT 4 >seq476 Length=815 Score = 212 bits (234), Expect = 8e-50 Identities = 312/438 (71%), Gaps = 3/438 (1%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | || ||| | || || || Sbjct 382 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 324 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || |||||||| || |||| || || | ||||||||||| Sbjct 323 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 264 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 ||| || || ||||| || | || | ||| || || ||| | ||||| ||||| || Sbjct 263 CATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 204 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||| ||| | || || |||||||||| |||| | || Sbjct 203 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 144 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | || ||||| ||||||||||| ||| || ||| Sbjct 143 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTT-CCG 85 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 |||||||||||| || ||||| ||||||||| || || || || || ||||| | ||| Sbjct 84 TCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGC 25 Query 179280 AGTATTCCTCGTCTATCC 179297 || ||| | |||| || Sbjct 24 TGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 165 bits (182), Expect = 1e-35 Identities = 177/232 (76%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 179617 CGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTT 179676 || || || ||||||||||| || || ||||| || || || ||||||||||||||| | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 179677 GGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAC 179736 || | || ||||| |||||||| || |||||||| |||||||| ||| | |||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 179737 GGTCAAGGACGTGTCCTTAACACATGGGCGGACGT-ATTGAACCGTGCAGGTTTGGGTAT 179795 ||||||||||||| |||| || ||||| || | ||| ||||||| | | ||| Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGATATCATT--ACCGTGCGAACCTTGATAT 178 Query 179796 GGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 179847 ||||||||||||||| ||||| || || | ||| || || ||||| |||||| Sbjct 179 GGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610312045394880