Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq476 197 2e-45 seq544 154 2e-32 seq3 118 1e-21 >seq476 Length=815 Score = 197 bits (218), Expect = 2e-45 Identities = 289/405 (71%), Gaps = 3/405 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 408 TTTACATTGGATGGTTTGGTGTTTTAATGATCCCTACCTTATTGACCGCAACTTC-TGTA 350 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 349 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 290 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| |||||||||||||| || ||||| || | | || | || Sbjct 289 TCTGGATCTCTACTTTATGGAAACAACATTATTTCAGGTGCCATTATTCCTACTTCTGCA 230 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 229 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 170 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || |||| |||| | |||||| | | ||| | | ||||||| Sbjct 169 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 110 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||| ||||||| | | ||||| ||||| |||||||| ||||||||| Sbjct 109 GGTCGTGAGTGGGAGCTTAGTT-CCGTCTAGGTATGCGACCTTGGATTGCTGTTGCATAT 51 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCA 176550 || || || || | || || | || |||||| | |||| ||| Sbjct 50 TCAGCTCCCGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCA 6 >seq544 Length=768 Score = 154 bits (170), Expect = 2e-32 Identities = 168/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 ||||||||||| || || | || || || | |||||||| ||||| | ||| || || Sbjct 10 CACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGC 69 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGT 176997 || ||||| |||||||| || |||||||| |||||||| || || | || | || Sbjct 70 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGATAGTCAAGGA 129 Query 176998 AAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATG 177057 || ||| ||| |||| |||||| || ||||||| ||||||| ||||||||||||| Sbjct 130 CGTGTAATTAATACTTGGGCTGATATCATT-ACCGTGCGAACCTTGATATGGAAGTTATG 188 Query 177058 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 || || ||||||||||| | ||| || || ||||| |||||| Sbjct 189 CATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 >seq3 Length=15484 Score = 118 bits (130), Expect = 1e-21 Identities = 194/280 (69%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 19300 TAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCGTATAC 19359 |||| | || || || ||||| ||| | || | || || | | ||| || || |||| Sbjct 9153 TAACTATTCAATACCCCTACGAAAAATTAATTACATCGGAACGTTTCCGAGGCCGAATAC 9094 Query 19360 ACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATC 19419 | | ||| ||||| || || || || ||||| || ||||| | ||||| ||||| ||| Sbjct 9093 ATTTTGAATTTGATAAATGCATTGCGTGTGAAGTATGTGTTCGTGTATGTCCTATAGATC 9034 Query 19420 TACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAATTATT 19479 |||| || || |||||| | | | | | |||||| | | ||||| Sbjct 9033 TACCTGTTGTAGATTGGAAATTCGAAATGGATATTCGAAAGAAACGATTGCTTAATTACA 8974 Query 19480 CGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACT 19539 || || || ||| ||||| || || ||||| ||||| |||||||| |||||||| | Sbjct 8973 GTATTGATTTCGGAATCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCCAACAAATT 8914 Query 19540 GTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 || |||| ||||| |||||||||||| || |||| | ||| Sbjct 8913 GTTTATCAATGACTGAAGAATATGAACTGTCTACTTATGA 8874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603477041992320