Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq7 407 2e-108 seq476 235 7e-57 seq544 190 3e-43 >seq7 Length=7073 Score = 407 bits (450), Expect = 2e-108 Identities = 601/846 (71%), Gaps = 4/846 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| |||||||| || || | || | Sbjct 847 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCT 788 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 787 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGT 728 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 |||||||||| || ||||| ||| || | || || ||| ||||| | || || ||| Sbjct 727 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AATTTCTTAACTGCCGCA 669 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | |||||| | | ||||| ||||||||||| | Sbjct 668 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGCA 609 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 || |||||| | | || |||| ||| | || || || |||| |||||| || |||| Sbjct 608 CAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCAT 549 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGG 186328 || || || | || |||||||||||||| || || || ||| | ||| ||| | Sbjct 548 GGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGATCTGTTCAA 489 Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388 | | || || || ||||| || || || |||| ||| || ||||| |||||| |||||| Sbjct 488 T-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 430 Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448 ||| || || || || || ||||| |||||||| || || ||||| || ||||| Sbjct 429 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGC 370 Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508 || ||| ||||| | | || | ||||| || || || ||||||||||| ||||| || Sbjct 369 TATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCA 310 Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568 |||||||| || || ||| | | || | |||| |||| | || || ||||||| ||| Sbjct 309 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTAC 250 Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 249 CGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 190 Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 || |||| |||||||| ||||| |||||||| || ||| | || ||||| || || || Sbjct 189 AACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTT 130 Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 129 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 70 Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGA 186808 ||| | |||| | | |||| | | ||||| ||||| ||||| || || ||||| Sbjct 69 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGA 10 Query 186809 CTTTGT 186814 |||||| Sbjct 9 CTTTGT 4 >seq476 Length=815 Score = 235 bits (260), Expect = 7e-57 Identities = 318/439 (72%), Gaps = 3/439 (1%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| || |||||| | ||||| || || | || |||||||| | Sbjct 443 CTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 384 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 ||||| || || | ||| | ||||| |||| || || | |||||| | ||||||| Sbjct 383 AATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 325 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || ||||| ||| |||| || || | |||||||||| Sbjct 324 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 265 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 |||| || || ||||| || ||||| |||| || || || | ||||| || || | Sbjct 264 ACATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 205 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| ||||| | ||||| ||| | || || ||||||||||| |||| | | Sbjct 204 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTG 145 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || || |||||||||||||||||||| | | | || Sbjct 144 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCC 86 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| |||||||| |||||||| |||||| ||| || || ||||| ||||| || | Sbjct 85 GTCTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTG 26 Query 183614 CTGTCTTCCTGGTCTATCC 183632 |||| ||| || |||| || Sbjct 25 CTGTTTTCTTGATCTACCC 7 >seq544 Length=768 Score = 190 bits (210), Expect = 3e-43 Identities = 183/233 (79%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 183952 CGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTT 184011 ||||| | ||||||||||| || |||||||| || || || |||||||| |||||| | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 184012 GGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGAT 184071 ||| ||||||||||||| || ||||| |||||||| || |||||||| ||| | ||||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 184072 GGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCA--ACCGTGCTGGTCTTGGCA 184129 ||||||| ||||| | || || ||||| || | ||| ||||||| |||| | Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGA---TATCATTACCGTGCGAACCTTGATA 177 Query 184130 TGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||||| ||||| || ||||||||||| | ||| ||||| ||||| |||||| Sbjct 178 TGGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622052507700120