Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothapodytes_20nimmoniana_20[genbank_20GCA_5F002091855.1_202017-04- 03] 2,301 sequences; 1,365,272 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq7 452 5e-122 seq476 255 7e-63 seq544 168 8e-37 >seq7 Length=7073 Score = 452 bits (500), Expect = 5e-122 Identities = 611/846 (72%), Gaps = 4/846 (0%) Strand=Plus/Minus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| |||||||| || || | || | Sbjct 847 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCCGGCCTATTGCTCT 788 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| | || | || || ||| | || || || || ||||| || | Sbjct 787 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCGT 728 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCT 170783 |||| ||||| ||| | || ||||| || | ||||| ||| |||||| | || || || Sbjct 727 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AATTTCTTAACTGCCGCA 669 Query 170784 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 170843 || || || |||||| || | | | |||||| | | ||||| ||||||||||| | Sbjct 668 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGCTACTATGGGGTCCTGAAGCA 609 Query 170844 CAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 170903 ||||| ||||| || |||| ||| | || || || |||| |||||| || |||| Sbjct 608 CAGGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTTGCTTTCCAT 549 Query 170904 GGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGG 170962 || || || | || |||||||||||||| || || || ||| | ||| ||| || Sbjct 548 GGCGCTTTCGGACTAATAGGTTTCATGCTACGTCAATTCGAACTTGCTCGATCT-GTTCA 490 Query 170963 GATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTT 171022 | |||| || ||||||||||| ||||||| ||| || ||||| ||||| || || Sbjct 489 ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATT 430 Query 171023 CCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGC 171082 ||| || ||||| || || ||||| |||||||||| || ||| ||||| || ||||| Sbjct 429 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGCGTAGCAGC 370 Query 171083 AATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCA 171142 || || || ||| | ||||| | ||||| || || || ||||| |||| |||||||| Sbjct 369 TATATTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATTTCA 310 Query 171143 TATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTAC 171202 ||||||||| ||||| ||| | | |||| ||| ||||| | || |||||||||| ||| Sbjct 309 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTTTGCTATGCGCTATTCATGGTGCTAC 250 Query 171203 AGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACAC 171262 ||||| |||||||| | ||||||||||||| ||||| || || || ||| || | Sbjct 249 CGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 190 Query 171263 GACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTT 171322 ||||| | |||||| || ||||| |||||||| ||||| || || ||||| || ||||| Sbjct 189 AACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTT 130 Query 171323 TGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCAT 171382 ||| | || || |||||| |||||||| |||||||||||| | ||||| || || | Sbjct 129 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 70 Query 171383 GGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGA 171442 ||| | ||| | ||| ||| || | | ||||| ||||| || || | || ||||| Sbjct 69 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGCGCCTATGA 10 Query 171443 TTTCGT 171448 || || Sbjct 9 CTTTGT 4 >seq476 Length=815 Score = 255 bits (282), Expect = 7e-63 Identities = 323/443 (73%), Gaps = 1/443 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| |||| |||||| |||||||| || | || ||||| || || | Sbjct 442 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTA 383 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| || || || ||||||||||| | |||||| Sbjct 382 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 323 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || ||||| ||| |||| ||||| | ||||| |||||| Sbjct 322 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAC 263 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || || ||||| || | || |||| || || ||| | ||||| || || || Sbjct 262 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATA 203 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | ||||||||||| ||||| |||||||||| |||| |||| Sbjct 202 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTT 143 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| | | || | | ||||||||||||||||||||| | | | ||| Sbjct 142 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCT-TAGTTCCGT 84 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 || |||||||| |||||||| |||||| || || ||||||||||| || || | ||| Sbjct 83 CTAGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCCGTTGCAGCTGCTACTGCT 24 Query 169772 GTTTTCCTGGTCTACCCGTTTGG 169794 |||||| || ||||||| |||| Sbjct 23 GTTTTCTTGATCTACCCAATTGG 1 >seq544 Length=768 Score = 168 bits (186), Expect = 8e-37 Identities = 178/233 (76%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 170108 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTT 170167 ||||| | ||||||||||| || || |||||||| || || ||||||||||| ||| | Sbjct 1 CGTTCGTTACACTTCTTCCTAGCGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 60 Query 170168 GGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGAT 170227 ||| | ||| ||||| |||||||| || |||||||| |||||||| ||| | | ||| Sbjct 61 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTGGTTGAT 120 Query 170228 GGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCA--ACCGTGCTGGTCTTGGCA 170285 |||| || ||||| | || || ||||| || | ||| ||||||| |||| | Sbjct 121 AGTCAAGGACGTGTAATTAATACTTGGGCTGA---TATCATTACCGTGCGAACCTTGATA 177 Query 170286 TGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCT 170338 ||||||| ||||| || ||||||||||| | ||| ||||| ||||| |||||| Sbjct 178 TGGAAGTTATGCATGAACGTAATGCTCATAGCTTTCCTCTAGACCTAGCTGCT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592181366893520