Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq21024 120 4e-22 seq103549 98.7 1e-15 >seq21024 Length=7623 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| |||||||| | ||||||||||| || || |||||| | || | |||| Sbjct 2794 GTTCCAGCATTAAAAAGAGTAGGAGAAGCATGTGTGAACCATCGCTGTGACAAAAGATGA 2735 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | || || || || ||||| | ||| || ||||| || || |||||||| || Sbjct 2734 TATGTTTGTATCGCAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACACGCATCAA 2676 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||| |||||||| || | |||| || || || | || ||||| |||| | Sbjct 2675 CATGTGCTGTGGTCTTTCTACAACCTTGCCTTTGATCTTTAACAGATAGGACCTTTCAAG 2616 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||||||||||| | | || |||||||| || || || || Sbjct 2615 AGTTTTAAAACCAAAAAAATCATAGTCAAAGTCTCTGTCATATATGAT 2568 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || ||||| || | |||| ||| |||| ||| |||||| | |||||||| ||| ||| Sbjct 3167 CCGCCCTGGTCCACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAATGCCA 3108 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || ||| ||||| || || ||||| ||||| ||||||| |||||| || || Sbjct 3107 TTTGATAATCCATTTGTTCCACGTATATAACTTCCTGTGGCACGGATATTATGAACAGAC 3048 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| |||| || ||| || | ||||| || ||| Sbjct 3047 ACACCAATACCTCCAGCTGATTTGCTAATTACAGCACATTCCTTAAGTGTATCGTATATG 2988 Query 54365 CCCTCTATACTATCATCCATCATG 54388 ||||| |||||||||||| ||||| Sbjct 2987 CCCTCAATACTATCATCCTTCATG 2964 >seq103549 Length=14649 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || |||||||| | |||||||||||| || || |||||| || || || |||| Sbjct 7486 GTCCCAGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCATCGTTGCGACAGAAGATGA 7427 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | || | || || ||||| | ||| ||||| || | || ||||||||| Sbjct 7426 TATGTTTTTATCACAGAATCAATATCATCCTTATGGATTCCAACAGAAACTCGCATTAAC 7367 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||| || || |||||||| | |||| | | || | || || || |||| | Sbjct 7366 ATGTGTTGTGGCCTTTCAACAACCTTGCCTTGAACCTTTAACAGATAAGACCTTTCAAGC 7307 Query 54605 GTTTTAAAACCAAAATA 54621 ||||||||||||||||| Sbjct 7306 GTTTTAAAACCAAAATA 7290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || ||||| || | |||| ||| |||| ||| |||||| | |||||||| || ||| Sbjct 7883 CCACCCTGGTCAACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACGCCA 7824 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || || ||||| || || ||||| ||||| | |||||||||||| | || Sbjct 7823 TTTGACAATCCATTTGTTCCACGTATATAACTTCCTGTAGCACGAATATTATGGACGGAC 7764 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| ||||| || || |||| || | || ||| || | |||||||| ||| Sbjct 7763 ACACCAATCCCTCCAGCTGATTTACTAATAACAGCACATTCCTTAAGTGTATCATATATG 7704 Query 54365 CCCTCTATACTATCATCCATCATG 54388 ||||| |||||||||||| ||||| Sbjct 7703 CCCTCAATACTATCATCCTTCATG 7680 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 ||||| ||||| |||||||| |||||| || || |||||| || |||||||| Sbjct 8399 TCTCTCTCGTACTTAGTATACAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCCA 8340 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 || |||| ||||| | || ||||| | ||| | | || |||| || ||||||| Sbjct 8339 GGGGCCTCATTTGGACAGAACAGTGACCATTGTCCATTAGACTGAACTCTTTGCATAAAG 8280 Query 54044 AGATCAGGAATCCAAAGAGCTATAAA 54069 |||||||| ||||||||||| ||||| Sbjct 8279 AGATCAGGTATCCAAAGAGC-ATAAA 8255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592816226510640